PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024771
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 226aa    MW: 24738.1 Da    PI: 4.6341
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024771genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.98.1e-163686155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++y+GVr +k +g++v+eIr p++   r r++lg++++a +Aa+a +aa  +l+g
  DCAR_024771 36 CKYTGVRKRK-WGKFVSEIRLPNS---RERIWLGSYDSAVKAARAFDAALYCLRG 86
                 79*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.27E-253696No hitNo description
PfamPF008471.9E-83686IPR001471AP2/ERF domain
PROSITE profilePS5103219.9153794IPR001471AP2/ERF domain
SMARTSM003801.7E-2737100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-263795IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-173795IPR016177DNA-binding domain
PRINTSPR003672.6E-73849IPR001471AP2/ERF domain
PRINTSPR003672.6E-76076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVKTVTNESG SGSNEAAARH GNQSRISKSS ADSSSCKYTG VRKRKWGKFV SEIRLPNSRE  60
RIWLGSYDSA VKAARAFDAA LYCLRGPDSK FNFPENPPEI PGGRSLTPPQ IQVEAARFAH  120
SGPRVVSDHD SSSSSDPSDE LQHVDSPSVS DGATQVNTEA GVDNMLMDQF KTMGWESNYS  180
VPDLGYFPSF EDFQDDLFMR PVTTGPVDNE VEESCDQFGS FLWSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1437941472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1882960.0AB188296.1 Daucus carota C-EF8 mRNA for embryonic element binding Factor 8, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219262.11e-167PREDICTED: ethylene-responsive transcription factor ERF017
TrEMBLA0A161ZN131e-166A0A161ZN13_DAUCS; Uncharacterized protein
STRINGXP_010099089.11e-56(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-47ERF family protein