PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024827
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-X1
Protein Properties Length: 745aa    MW: 84215.6 Da    PI: 8.6348
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024827genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.61.9e-06117134320
     zf-NF-X1   3 kHkCqklCHeGpCppCpq 20 
                  +HkC+++CH G+CppC++
  DCAR_024827 117 RHKCGEICHDGECPPCRE 134
                  7***************85 PP
2zf-NF-X118.35.1e-06275294120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  CG+H C++ C+ G+CppC++
  DCAR_024827 275 CGRHACKRRCCDGDCPPCSE 294
                  ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060082.84E-6112152No hitNo description
PfamPF014220.0021115133IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0017115134IPR000967Zinc finger, NF-X1-type
CDDcd060086.05E-6158198No hitNo description
PfamPF014222.7168186IPR000967Zinc finger, NF-X1-type
SMARTSM004380.061168187IPR000967Zinc finger, NF-X1-type
CDDcd060082.96E-9212261No hitNo description
PfamPF014220.006222241IPR000967Zinc finger, NF-X1-type
SMARTSM004380.027222242IPR000967Zinc finger, NF-X1-type
CDDcd060081.20E-7265313No hitNo description
PfamPF014227.1E-4275293IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092275294IPR000967Zinc finger, NF-X1-type
CDDcd060084.76E-11292340No hitNo description
PfamPF014220.019302320IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0053302321IPR000967Zinc finger, NF-X1-type
SMARTSM0043836359380IPR000967Zinc finger, NF-X1-type
PfamPF014225.6369379IPR000967Zinc finger, NF-X1-type
PfamPF0142236388397IPR000967Zinc finger, NF-X1-type
SMARTSM0043847388433IPR000967Zinc finger, NF-X1-type
PfamPF014220.12470480IPR000967Zinc finger, NF-X1-type
SMARTSM004386.5470500IPR000967Zinc finger, NF-X1-type
SMARTSM004380.29510528IPR000967Zinc finger, NF-X1-type
SMARTSM0043811573594IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MSFICSVFKA GLVSLLILLP HAPPRASPFP PPWRLLILML FGTAPNVEVS ILRVIYLKLI  60
IVFVGKLRTR FVIPGCCHIL AVRFVGGICL INVDIAVCCC VILARVLRVL NWLDCERHKC  120
GEICHDGECP PCRERGVYRC QCGKVEEERE CYGRSFRCEV ACGKLLGCGK HVCEKGCHKE  180
ECGECPFQGR RMCPCGKRVY QGMACDVVVP LCGATCEKML SCGLHRCPER CHRGSCAETC  240
RTVVTKSCRC GSLKKQVPCY QDLACERKCQ SLRDCGRHAC KRRCCDGDCP PCSEICDRKL  300
RCRNHKCPSP CHRGSCAPCP VMVKISCFCG ETHFEVPCGT EKEQKPPKCR KLCRIASMCR  360
HGLNRKPHRC HYGACPPCRL ICEEKYPCGH KCNLSCHGPK PPPNPEFTLK PKSKKYIRPS  420
ESTPGLPCPP CPELVWRSCR GRHVGAERMM VCSDRREFSC DNLCGNLLRC GNHYCTKICH  480
ALKNQSPVPE RGESCEDCDL PCQKDRIPAC SHHCPLKCHG KECPPCKVLI KRSCHCGSMV  540
HVFECIYYNS LSESEQLKVR SCGGPCHRKL PNCTHLCPET CHPGQCPSPE KCVKKVTVRC  600
GCQTLKKEWL CKDVQMAYCH DDRDPKEIPK SQFGLGLLPC NSDCRKKVTP ADSELKFRKS  660
EVLEKEEPEK NLPKRRRRRA RLEEGQKVSR LQNMFATIKR VFLLAVFIIS LIAIAYFGYK  720
GLLRLSDWMN EMEVQRQRKR RPRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1673678KRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218863.10.0PREDICTED: LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A164TMF90.0A0A164TMF9_DAUCS; Uncharacterized protein
STRINGVIT_13s0067g00920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors