PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024874
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 221aa    MW: 25033 Da    PI: 7.1154
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024874genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-08169218147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r+ W+  E++ l  +v+++G g+Wk+   +     + Rt+ ++k++w++ 
      DCAR_024874 169 RKFWSNLEEDTLRAGVQKYGIGNWKLNLDMYRdilNERTDGDLKDKWRNM 218
                      678***********************999999***99***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.178164219IPR017877Myb-like domain
SuperFamilySSF466891.01E-12166219IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-11168218IPR009057Homeodomain-like
CDDcd116605.37E-15170219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVGDFCYVQR ETVHHRSEVH AAPGTSRGVE IVDNDDLSDA SPNNNYGCLS TPEVAKLQEN  60
LRSSTLELQK KVKDPLPEAL AMAKNVVPKL DCVDKRSDVI PAENNNLENE GRNAAKASLM  120
ERNKTACTYE WDESSDVSAD ESRPHLSSHK TRLVTLEKHK NPKPLRRKRK FWSNLEEDTL  180
RAGVQKYGIG NWKLNLDMYR DILNERTDGD LKDKWRNMTA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017248829.11e-111PREDICTED: uncharacterized protein LOC108219813
TrEMBLA0A161X5V71e-162A0A161X5V7_DAUCS; Uncharacterized protein
STRINGXP_010262300.15e-41(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.18e-10TRF-like 7