PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024908
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YB
Protein Properties Length: 164aa    MW: 18517.5 Da    PI: 6.2802
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024908genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB157.62e-4920114397
        NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  eq+ +lPianv+rimkk+lPanaki+k+ ket+qecvsefisfvt+eas+kc++e+rkt+ngdd++wa+  lGf+++ +plk yl +yre+eg++
  DCAR_024908  20 EQELLLPIANVGRIMKKILPANAKIAKEGKETMQECVSEFISFVTGEASEKCRKERRKTVNGDDIVWAIDRLGFDNFGHPLKRYLDRYREVEGDQ 114
                  79999****************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.9E-4920149IPR009072Histone-fold
SuperFamilySSF471132.79E-3721139IPR009072Histone-fold
PfamPF008081.3E-252588IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.9E-165270No hitNo description
PROSITE patternPS0068505571IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.9E-167189No hitNo description
PRINTSPR006154.9E-1690108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MTSKDTGASG SSSTPPQPYE QELLLPIANV GRIMKKILPA NAKIAKEGKE TMQECVSEFI  60
SFVTGEASEK CRKERRKTVN GDDIVWAIDR LGFDNFGHPL KRYLDRYREV EGDQRANMNI  120
VHDRAGFNEE NEEQFQSYVR NAQQDKRYNS DRNTDHQGGA SQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4120109392Transcription factor HapC (Eurofung)
4g92_B5e-4120109392Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217215.11e-121PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822482e-48NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A164TPT71e-120A0A164TPT7_DAUCS; Uncharacterized protein
STRINGPOPTR_0008s22520.13e-53(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.17e-47nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]