PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_025008

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 428aa MW: 47896.6 Da PI: 5.0799

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_025008	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.9	3.6e-08	203	250	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h Er+RR ++ ++ L+ l+P++ +K + a+i+ ++YIk+Lq DCAR_025008 203 TKHLGTERQRRVDLGGKYTILKNLIPSP-----TKGDRASIVADGINYIKELQ 250 667788********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.6E-10	198	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.12E-8	198	253	No hit	No description
PROSITE profile	PS50888	12.582	200	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.01E-12	200	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.2E-6	203	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.001	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MILNSDHTNE CFDPTSIQDQ TLGQQIVVPN FSPPLTYTQQ DGLSFEYQNQ MGLEIDNQMI 60 QETGLANWDV TQNQDMNFTQ ESQMLNNFST HNQSFVNSDS YFLTQTTPCT QANDMLSFSS 120 ISFTNPSQKF GFSGDVGNVS GSNILFDPMS HLNLPPQTPL FRELFHQSFP GTKSEGNGEF 180 DDGVFEFGSE MKFLAKGKEA KTTKHLGTER QRRVDLGGKY TILKNLIPSP TKGDRASIVA 240 DGINYIKELQ RTVNELKVMV EKKRYHRDRL RRHKIEDESG LEVESGKPNG EMGQAFNGPS 300 LRSSWLQRKS KNIEVDVRII DDEVTIKLVQ QKRINSLLVV SKVLDELQLD LQHVAGGLIG 360 DFYSFLFNSK IYEGSSAYAS AIANKLIDVV DRQYAAASQT RCNGGSVTAI DAQLATDREP 420 TDRELIK*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MILNSDHTNE CFDPTSIQDQ TLGQQIVVPN FSPPLTYTQQ DGLSFEYQNQ MGLEIDNQMI  60
QETGLANWDV TQNQDMNFTQ ESQMLNNFST HNQSFVNSDS YFLTQTTPCT QANDMLSFSS  120
ISFTNPSQKF GFSGDVGNVS GSNILFDPMS HLNLPPQTPL FRELFHQSFP GTKSEGNGEF  180
DDGVFEFGSE MKFLAKGKEA KTTKHLGTER QRRVDLGGKY TILKNLIPSP TKGDRASIVA  240
DGINYIKELQ RTVNELKVMV EKKRYHRDRL RRHKIEDESG LEVESGKPNG EMGQAFNGPS  300
LRSSWLQRKS KNIEVDVRII DDEVTIKLVQ QKRINSLLVV SKVLDELQLD LQHVAGGLIG  360
DFYSFLFNSK IYEGSSAYAS AIANKLIDVV DRQYAAASQT RCNGGSVTAI DAQLATDREP  420
TDRELIK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017217992.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A164TSU6	0.0	A0A164TSU6_DAUCS; Uncharacterized protein
STRING	cassava4.1_028473m	1e-111	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2696	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	1e-85	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_025008