PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025068
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 200aa    MW: 22315.2 Da    PI: 9.3456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025068genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1891142155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+G+r+++ +g+++AeIr p +  k kr++lg++ t+e+Aa a+++a+ k++g
  DCAR_025068  91 SRYRGIRRRP-WGKFAAEIRSPAK--KGKRVWLGTYETPEDAALAYDRAAFKIHG 142
                  79********.**********944..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-1391142IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2391151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-3192151IPR001471AP2/ERF domain
PROSITE profilePS5103224.2592150IPR001471AP2/ERF domain
SMARTSM003809.5E-3792156IPR001471AP2/ERF domain
PRINTSPR003674.0E-1093104IPR001471AP2/ERF domain
CDDcd000183.53E-26100152No hitNo description
PRINTSPR003674.0E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MNQDLFMGTD LSYLLQSIEH QLLDDSDLAN IYPSMNSSCW EPPEPILNNF FFVESDEPAL  60
SLEYTPRMEV EEKKQEDKAA QPVTRAPHGR SRYRGIRRRP WGKFAAEIRS PAKKGKRVWL  120
GTYETPEDAA LAYDRAAFKI HGSSAKLNFP HLIGKNIPEP VKVTPRQRSS TSSSCSSSSS  180
SSNSGCIKKS AKVATIYRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2893150663ATERF1
3gcc_A6e-2893150663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216541.11e-148PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A164TU831e-146A0A164TU83_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000914742e-54(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-33ethylene-responsive element binding factor 13