PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_025082

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

SBP

Protein Properties

Length: 216aa MW: 24320.9 Da PI: 10.233

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_025082	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.9	4.5e-41	67	144	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v++sgl+qrfCqqCsrfh l+efD++krsCr+rLa+hn+rrrk+++ DCAR_025082 67 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAATVIASGLTQRFCQQCSRFHLLTEFDNGKRSCRKRLADHNRRRRKTHQ 144 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.5E-35	62	129	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.342	65	142	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.19E-38	66	144	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.8E-31	68	141	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MISFDPVHDP TGFIIVPKTE PASSEFTSRI GLNLGGRTYF SSSEDDFVNR LYRRSRAIET 60 GSVNAPRCQA EGCNADLTHA KHYHRRHKVC EFHSKAATVI ASGLTQRFCQ QCSRFHLLTE 120 FDNGKRSCRK RLADHNRRRR KTHQTNQDQS SKSQLENAHN SSSENLTRSP PDSSLQSSSS 180 VTMPISPPRI SLDSFRQRLN YQGSSSSTNS RFLNE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-32	60	141	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017216598.1	1e-157	PREDICTED: squamosa promoter-binding-like protein 8
Refseq	XP_017216599.1	1e-157	PREDICTED: squamosa promoter-binding-like protein 8
Refseq	XP_017216600.1	1e-157	PREDICTED: squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3	5e-73	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A164TUF9	1e-157	A0A164TUF9_DAUCS; Uncharacterized protein
STRING	cassava4.1_023056m	1e-106	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4846	23	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	6e-74	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	DCAR_025082

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]