PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025087
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARR-B
Protein Properties Length: 401aa    MW: 44983.5 Da    PI: 5.6829
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025087genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.84.2e-22152203254
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                  +rl+Wt+eLH+rFvea+  + G ++A+P +il +m+v gLt+ +v+SHLQkY 
  DCAR_025087 152 NRLVWTCELHSRFVEAILVI-GYDRAVPANILGVMNVVGLTRRQVASHLQKYQ 203
                  7*******************.*******************************6 PP
2Response_reg62.71.8e-2141061109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdf 97 
                   vl vdD+ + + +l+ +lek +y +v+++++++eal +l +k +D+++ D+ mp+m+Gl+l ++i++    lp+i   a+     +   +k Ga++f
   DCAR_025087   4 VLAVDDDTTCLLILKACLEKWNY-QVTVVKHAHEALSMLGNKPFDMVISDVHMPDMNGLKLQERINQDF-GLPVIYTRAE----VMCMGIKNGAQRF 94 
                   799********************.*****************************************9988.9**9986644....57999******** PP

                   EESS--HHHHHH CS
  Response_reg  98 lsKpfdpeelvk 109
                   ++Kp+  e+l +
   DCAR_025087  95 FVKPIVAEDLKD 106
                   *****9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.12E-271122IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.3E-271129No hitNo description
SMARTSM004482.6E-172108IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.7923112IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.1E-184106IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.39E-225111No hitNo description
PROSITE profilePS512949.014148207IPR017930Myb domain
SuperFamilySSF466896.45E-15150207IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-20151204IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-19152203IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MYNVLAVDDD TTCLLILKAC LEKWNYQVTV VKHAHEALSM LGNKPFDMVI SDVHMPDMNG  60
LKLQERINQD FGLPVIYTRA EVMCMGIKNG AQRFFVKPIV AEDLKDIWQF AEWWKRNRNN  120
NIAPCTQINE SSEESLVGSH KNNDNTTGRW RNRLVWTCEL HSRFVEAILV IGYDRAVPAN  180
ILGVMNVVGL TRRQVASHLQ KYQQFLEGVL AGEKNIEFSN WTDLNYYSRF VSGNPNIILL  240
NQLKAEQRKG NSSASQNPLR PHKEGNLNTT ARARNGSLSS FPRLPQLTIG EELTRSTIYA  300
TLPQKTDSSK NVASSGLGNS TLPKLGNKHG EPSMDISSCA NQFGNTSAMN APELGGEKMT  360
DGSWFNNTGR EDGNDYLLNV EDEDDEDEDL NPQRNSERDL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-14151207157Transcription factor LUX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217260.11e-178PREDICTED: two-component response regulator ORR21-like
RefseqXP_017245394.11e-176PREDICTED: two-component response regulator ARR1-like
TrEMBLA0A164TUG90.0A0A164TUG9_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-43response regulator 2