PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025190
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family BES1
Protein Properties Length: 696aa    MW: 78106.9 Da    PI: 4.8201
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025190genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822147.11.5e-45722131134
       DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssas..asp 90 
                  ggs+r ++++E+E++k+RER+RRai+aki++GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +g+kp     ++ ++ ss++   ++
  DCAR_025190  72 GGSRRCRPMEEKERTKLRERQRRAITAKILTGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGTKPAavtPTTVVTSSSTQmtPQQ 169
                  6899*****************************************************************98889999998532333333333332344 PP

       DUF822  91 esslqsslkssalaspvesysaspksssfpspssldsislasaa 134
                  +s+ ++   ss+ +s ve  ++++k   +ps+s +d +s+a ++
  DCAR_025190 170 TSPASLGGMSSSYQSTVEYNACQMKDIFVPSSSPYDVTSNAPSQ 213
                  5555578899**************************99876443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.7E-4073207IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.28E-169254692IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.806.4E-187257691IPR013781Glycoside hydrolase, catalytic domain
PfamPF013734.4E-98263683IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-64294308IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-64315333IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-64337358IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.4E-6420429IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.5E-64430452IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-64503522IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-64537553IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-64554565IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.5E-64572595IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.4E-6575585IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.5E-64612634IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.4E-6663677IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008424.4E-6678692IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MSSEMQKFQT SEDDDDEMGM DVKEEDDEDE DDDDKNTANQ VMVGVEGGFT STSSNNRFQQ  60
NQQYQEQLTP QGGSRRCRPM EEKERTKLRE RQRRAITAKI LTGLRRHGNY NLRVRADIND  120
VIAALAREAG WVVLPDGTTF PSRSQGTKPA AVTPTTVVTS SSTQMTPQQT SPASLGGMSS  180
SYQSTVEYNA CQMKDIFVPS SSPYDVTSNA PSQTSALLVE GLDVQDDPII GGSMDAVDNR  240
QVVIIPQRLQ ERDFAGTPYV PVYVMLPLGV INMKCELVDP DSLLNQLRFL KAINVDGVVI  300
NAWWGIVEAH GPQVYNWSGY KRLFQVVRDL KLKLQVVLCF HECGGNLGDD VIIPLPNWVA  360
EIGLTNPDIY FTDRAGRRNQ ECLSWGIDKE RVLRGRTAVE VYFDYMRSFR TEFDLFFEDG  420
TISLIEIGLG PCGELRYPSN PVKHGWRYPG VGEFQCYDQY LLKSLRRAAE TRGHSFWARG  480
PDNSGSYNSQ PKETGFFCDG GDYNGHYGRF FLGWYSQVLI DHGDRLMALA RMAFEGICIA  540
AKLSGIYWWY KSSSHAAELT AGFYNPCNRD GYAPIMAMLR KHEAGLNFTC VGTCMLVPCG  600
DFSGELGDPE GLNWQVLNAA WDALVPVSSE NDLPCHDRDG YNRILEKAKP LNDPDGRHFT  660
SFTYLSVSLL LMERQNFMEF ERFVKKMHGE AVLDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1uko_A1e-14325969011444Beta-amylase
1uko_B1e-14325969011444Beta-amylase
1uko_C1e-14325969011444Beta-amylase
1uko_D1e-14325969011444Beta-amylase
1ukp_A1e-14325969011444Beta-amylase
1ukp_B1e-14325969011444Beta-amylase
1ukp_C1e-14325969011444Beta-amylase
1ukp_D1e-14325969011444Beta-amylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218898.10.0PREDICTED: beta-amylase 7 isoform X1
RefseqXP_017218899.10.0PREDICTED: beta-amylase 7 isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A164TXA40.0A0A164TXA4_DAUCS; Beta-amylase
STRINGVIT_15s0046g02640.t010.0(Vitis vinifera)
STRINGSolyc01g094580.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]