PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025258
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 609aa    MW: 67491.6 Da    PI: 6.2233
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025258genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13426472455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+r+N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  DCAR_025258 426 NHVEAERQRRERLNQRFYALRAVVPNiS------KMDKASLLGDAIAYISELQ 472
                  799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.9E-5146234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.92422471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-14425476No hitNo description
SuperFamilySSF474591.96E-17425483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16426480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-11426472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-16428477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MGGTMWTEED KAMAVEVLGK GAFDYLISSS VSAECSFTEV ENDESLQTKL SDLVDCPNLS  60
GFSWNYAIYW QISRSMSGDL VLGWGDGSCR ELREEEESEV KGILSSRHDD ESQQRMRKNV  120
LQKLHSLFGG SEDECYASGL DRVTDIEMFF LVSMYFSFPI GKGAPGKCFG SRKHVWILDA  180
LKLSNNYCFR SVLARNAGTQ TLVLIPTDVG VVELGSVRSL PESVELVQSI TSAFSSPPSI  240
SKPQPQTARP VTRENGENRQ FFDGGIPERQ RITKIFGQEF NSNRSEFRPK LAVRKADERS  300
SDEYLNKNKL PSPSTRTCFN AQNLANFNNG KQGETVEIYS PQTPTNSILK GGVPDHFDFK  360
QFDSQRPAPR QIEFSRAKTI PSWPVIIESE PSDVNPVCKE EQATLADGKS HRKRGRKPAN  420
GEGPLNHVEA ERQRRERLNQ RFYALRAVVP NISKMDKASL LGDAIAYISE LQKKVKGLES  480
ISSTSRDSSS SDAKSNLEYQ TQVSHVEITA ADKLVNVRVT CPLESHPVSR VIEALREAQF  540
GVIESKFTAA NDMVFHTFVI KMEGTEQLTK ERLLAAFSHQ ASSSQPLSSV GLSSDFNTNE  600
TLNGTSAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-25422355193Transcription factor MYC3
4rqw_B4e-25422355193Transcription factor MYC3
4rs9_A4e-25422355193Transcription factor MYC3
4yz6_A4e-25422355193Transcription factor MYC3
5gnj_A6e-26422480462Transcription factor MYC2
5gnj_B6e-26422480462Transcription factor MYC2
5gnj_E6e-26422480462Transcription factor MYC2
5gnj_F6e-26422480462Transcription factor MYC2
5gnj_G6e-26422480462Transcription factor MYC2
5gnj_I6e-26422480462Transcription factor MYC2
5gnj_M6e-26422480462Transcription factor MYC2
5gnj_N6e-26422480462Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431436RQRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215670.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A161X6Y50.0A0A161X6Y5_DAUCS; Uncharacterized protein
STRINGVIT_15s0046g00320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-149bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]