PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025295
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 704aa    MW: 78886.5 Da    PI: 9.9761
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025295genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07599648147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     ++Rt  ++k++w ++
      DCAR_025295 599 RRPFSVSEVEALVEAVEKLGTGRWRDVKMRSFddvNHRTYVDLKDKWKTL 648
                      678999********************9655556999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.039594653IPR017930Myb domain
SMARTSM007175.3E-8598651IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-10599649IPR009057Homeodomain-like
CDDcd116608.14E-18600650No hitNo description
SuperFamilySSF466898.22E-16600681IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000781Cellular Componentchromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MVLKKRQEYG FHGNQIPVVP TGPRSLRRRR SFKKESLDDD QLCAFELLAA VAGKLLRESE  60
SSASSNVAEG KVQLGMHKDG IKKEQVEETV ARPECLDQES CIESVIVPKS AVLERSTKST  120
TKELPLVGNI SVSEHISVVT NSNFLDKVGG DAKHKKCTSK AAARSFLSKS EESFLGIGKL  180
CDVNIGDNAQ RMQEGVGKQN GHFNMVNCGG LEDPQDYYVH STHKPINFEG SIKFPLYRDN  240
VPVASFHKHG NNVKIADKDD DENYFRSSYL NTRIKASRPQ SRFGYRRMKK LMTSRNWRTA  300
PKLIDYEFNS TGRGDRPIYH KRKTGNAYGG YQRELHSKRR RLHDRRKMCH YRSATAYDQQ  360
ASSESISNFP EKAMKGDNSG TPALHRENVV SSSDIGHKAS FHAKDTRVKF SIKSFKVPEL  420
YIEVPETATV GSLKMTVMKA VNAILEGGLH VGVVLQGQRV ENDNITLRQI GISHDEDLDT  480
LGFTLEPNLL QATSPISRKD PPVLLPCNKQ QDLSRLGRLP VPALDSGFLK SSYDPVPVTK  540
LDNHVENNQE IVPYFTDVLT DVSVSKALVP VPPMNVNTLA IVPLNQKAKR TDLSQRRTRR  600
PFSVSEVEAL VEAVEKLGTG RWRDVKMRSF DDVNHRTYVD LKDKWKTLVH TASIAPQQRR  660
GQPVPQELLD RVLAAHAYWS QHQSKQHGKH QIQPLKFAGE VGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-605836971111Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320340KRKTGNAYGGYQRELHSKRRR
2337341KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218447.10.0PREDICTED: telomere repeat-binding protein 4-like
TrEMBLA0A161ZPB30.0A0A161ZPB3_DAUCS; Uncharacterized protein
STRINGVIT_13s0019g01670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-79TRF-like 2