PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025335
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HB-other
Protein Properties Length: 92aa    MW: 10992.7 Da    PI: 9.8896
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025335genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.37.1e-1025631854
                 HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
                 lFe+  ++yp+ +++  LAk++ L+ +qV++WF N R +
  DCAR_025335 25 LFEQflHPYPKDSDKHMLAKQTILSRSQVSNWFINARVR 63
                 6887779******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.548467IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-28675IPR009057Homeodomain-like
CDDcd000868.17E-10768No hitNo description
SMARTSM003894.2E-6771IPR001356Homeobox domain
SuperFamilySSF466893.08E-16876IPR009057Homeodomain-like
PfamPF059202.7E-172463IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MIQHNAWRPQ RQLPKRSVSV LRAWLFEQFL HPYPKDSDKH MLAKQTILSR SQVSNWFINA  60
RVRLWKPMVE EMYTEGELFC YYTNQEAPPV V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-161371563Homeobox protein Meis2
3k2a_B8e-161371563Homeobox protein Meis2
4xrm_A8e-161371563Homeobox protein Meis2
4xrm_B8e-161371563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042587.12e-44PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011042589.12e-44PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011042590.12e-44PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011042591.12e-44PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011042592.12e-44PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011042593.12e-44PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SW801e-37BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A161ZPE53e-62A0A161ZPE5_DAUCS; Uncharacterized protein
STRINGGLYMA03G36070.12e-43(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.25e-40BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]