PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_025352

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 424aa MW: 45112.9 Da PI: 6.7935

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_025352	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.9	1.1e-35	79	164	2	87
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 ++ k++++++hTkv+gR+RR+R++a aar+F+L++eLG+++d++ti+WLlq+a+p i+ +tgt++ +a++++++ ++s ++s s DCAR_025352 79 TVPKRPSKDRHTKVDGRGRRIRMPAMSAARVFQLTRELGHKSDGETIQWLLQKAEPHIIGATGTGTVPANFTTQSPVVNSRGSSFS 164 56799****************************************************************88855555555443222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.5E-31	85	189	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.445	85	139	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MDLKHLNKTN NKPQTTAATA TVAPEHRHRQ HHQVDEKSSP LNMALISTQP TNPNPITTPQ 60 INSSLAIPTT GSNPIIAQTV PKRPSKDRHT KVDGRGRRIR MPAMSAARVF QLTRELGHKS 120 DGETIQWLLQ KAEPHIIGAT GTGTVPANFT TQSPVVNSRG SSFSVASSMS AAPQYGPFGV 180 AHNGGYSQML QNVLVPDQMS RGISGIRDDR SGSGNDEGGI ENETVDDCSR KRFRGNLFSG 240 DEQVSGDSSS ASDKRVKSCL EEAGGSDLSQ CNGMVPMWAV APAASAGSGN MFWMFPFTAN 300 AGGGIGDDGV CDKVPISPFT PPSHNVKRNA RQPAPHFMSR FNGQGNVELQ GGDANALQLG 360 LMLEQQQSQE QLGFGMNETN LGMLASFSAR GGFDIKSEQK QASEQQHQDS QASDGGEDEA 420 NSC*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MDLKHLNKTN NKPQTTAATA TVAPEHRHRQ HHQVDEKSSP LNMALISTQP TNPNPITTPQ  60
INSSLAIPTT GSNPIIAQTV PKRPSKDRHT KVDGRGRRIR MPAMSAARVF QLTRELGHKS  120
DGETIQWLLQ KAEPHIIGAT GTGTVPANFT TQSPVVNSRG SSFSVASSMS AAPQYGPFGV  180
AHNGGYSQML QNVLVPDQMS RGISGIRDDR SGSGNDEGGI ENETVDDCSR KRFRGNLFSG  240
DEQVSGDSSS ASDKRVKSCL EEAGGSDLSQ CNGMVPMWAV APAASAGSGN MFWMFPFTAN  300
AGGGIGDDGV CDKVPISPFT PPSHNVKRNA RQPAPHFMSR FNGQGNVELQ GGDANALQLG  360
LMLEQQQSQE QLGFGMNETN LGMLASFSAR GGFDIKSEQK QASEQQHQDS QASDGGEDEA  420
NSC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017216233.1	0.0	PREDICTED: transcription factor TCP8
TrEMBL	A0A164U0S2	0.0	A0A164U0S2_DAUCS; Uncharacterized protein
STRING	EOX97160	7e-77	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	7e-47	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_025352