PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025363
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 248aa    MW: 27755.2 Da    PI: 5.0196
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025363genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.61.8e-37101111101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  aCaaCk++rr+C++dC+lap fpa+qpk f+ vh+lFG+s+v+k+lk++ +++++ dam+s++ye+ +r + Pv+G+ g+i++l+q+l+++ +el+++
  DCAR_025363  10 ACAACKFQRRRCSSDCPLAPFFPADQPKIFNDVHRLFGVSKVIKILKKMrNDDQKIDAMKSIIYESYIREKFPVHGCSGIISQLNQELQKATQELHYV 107
                  7************************************************4555699*****************************************9 PP

       DUF260  98 keel 101
                  +++l
  DCAR_025363 108 RAQL 111
                  9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.669111IPR004883Lateral organ boundaries, LOB
PfamPF031959.1E-3610108IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MKVKGGPNKA CAACKFQRRR CSSDCPLAPF FPADQPKIFN DVHRLFGVSK VIKILKKMRN  60
DDQKIDAMKS IIYESYIREK FPVHGCSGII SQLNQELQKA TQELHYVRAQ LAMLRENNSP  120
SSQIMNSYDL FSEINENGSA FYTEQSADET KCLFNRNNYV TDDNNKLLEI ETQLGGSCAF  180
AVTPNQVAEG CDQDYDILNF NAIDDLPSKE ACESSSESTS RDTKLLELGP ESELKNAAAY  240
FSLMNIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2361117111LOB family transfactor Ramosa2.1
5ly0_B3e-2361117111LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218178.10.0PREDICTED: LOB domain-containing protein 27-like
TrEMBLA0A164U1270.0A0A164U127_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-45LOB domain-containing protein 27