PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025369
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 218aa    MW: 24967.5 Da    PI: 5.9747
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025369genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.3e-193082456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++++++eq+++Le+ Fe  +++  e++ +LA++lgL+ rq+ +WFqNrRa++k
  DCAR_025369 30 KRRLNSEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWK 82
                 45799***********************************************9 PP
2HD-ZIP_I/II132.22e-4228119192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  e+krrl++eqvk+LE+sFe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlE+dy+ Lkr++d+lk++n++L++ +++L+ el 
  DCAR_025369  28 ERKRRLNSEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWKTKQLERDYDILKRQFDSLKADNDSLRSRNKQLQGELI 119
                  69*************************************************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-202086IPR009057Homeodomain-like
PROSITE profilePS5007117.3292484IPR001356Homeobox domain
SMARTSM003899.2E-192788IPR001356Homeobox domain
CDDcd000861.62E-152985No hitNo description
PfamPF000464.0E-163082IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-203191IPR009057Homeodomain-like
PRINTSPR000314.2E-65564IPR000047Helix-turn-helix motif
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PRINTSPR000314.2E-66480IPR000047Helix-turn-helix motif
PfamPF021831.7E-1584124IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSYTGIERCE EVRAEDDMSD DGSQSVGERK RRLNSEQVKA LEKSFELGNK LEPERKMQLA  60
RSLGLQPRQI AIWFQNRRAR WKTKQLERDY DILKRQFDSL KADNDSLRSR NKQLQGELIA  120
LKARESGNED RNINLNKETH EGSWSNASEN EHSSDHVNTT AGLTQIFLQS SSSAPDLLQA  180
HQGLNQTVPD QAFVSMFNGI DEHPAGFWPW PEQQNFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732ERKRRL
27684RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217862.11e-160PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ004668e-66HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A164U1551e-159A0A164U155_DAUCS; Uncharacterized protein
STRINGPOPTR_0017s11800.14e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.13e-68homeobox 3