PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_025374

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

ZF-HD

Protein Properties

Length: 316aa MW: 34315.3 Da PI: 9.0447

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_025374	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	109.6	1.7e-34	59	116	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNhAa+lGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++e+ DCAR_025374 59 VVNYKECLKNHAATLGGHALDGCGEFMPSPSATpTDPTSLKCAACGCHRNFHRRDPED 116 589***************************99******************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.4E-28	60	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-18	60	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.5E-31	61	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.243	62	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.97E-18	181	253	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-28	186	253	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	9.4E-26	192	248	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MDITNTNTTP NTNTLTIKTT HESDLEISPT KIQLPKPLSF SNGVVLKHNA LSKPSIPVVV 60 NYKECLKNHA ATLGGHALDG CGEFMPSPSA TPTDPTSLKC AACGCHRNFH RRDPEDSSLT 120 LPPKNSFIEY QPHHRHRPPP PESPSSMSPP PISSSYPASA PHMLLALSDG LMGPQNNHSA 180 PIAHIRAHPN GRKRFRTKFS QQQKEKMFGF AERVGWKIQK RDEQDIINFC SEIGVDRSVL 240 KVWMHNNKST LGKRDSNINN NVNGNTNYNV NNNGDGGDQV QQAQLNNLQH SDSTGSPLVG 300 GVNLGPNGNV SSSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-22	193	250	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017215707.1	0.0	PREDICTED: zinc-finger homeodomain protein 10-like
Swissprot	Q9LHF0	4e-71	ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBL	A0A161Y7B7	0.0	A0A161Y7B7_DAUCS; Uncharacterized protein
STRING	XP_010257380.1	3e-93	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1088	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	3e-69	homeobox protein 34

Link Out ? help Back to Top
Phytozome	DCAR_025374

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]