PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025415
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 547aa    MW: 60525.8 Da    PI: 6.247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025415genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064931123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C  C+ksFs+  +L  H+r H
  DCAR_025415  9 YLCRFCSKSFSSGNSLGGHMRGH 31
                 56*******************98 PP
2zf-C2H2140.00014104124323
                  ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                  C+ Cgk F++      H+r+H
  DCAR_025415 104 CKECGKGFPSLKAVAGHMRSH 124
                  ********************9 PP
3zf-C2H216.72.1e-05134155223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C+ Cgk F ++  L  H+r+H
  DCAR_025415 134 VCKECGKLFDSPRALFGHMRSH 155
                  6********************9 PP
4zf-C2H214.20.00013387409123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C++C k+F+++  L  H  tH
  DCAR_025415 387 FMCKICYKTFKTPQALGGHRTTH 409
                  89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-4531IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.2E-5632No hitNo description
SMARTSM003550.085931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45931IPR007087Zinc finger, C2H2
PfamPF139122.6E-6932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.053102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598102129IPR007087Zinc finger, C2H2
SuperFamilySSF576676.38E-9103155No hitNo description
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
PfamPF139124.1E-6104125IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.887133160IPR007087Zinc finger, C2H2
SMARTSM003550.013133155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-4134157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
PfamPF139128.8E-6135157IPR007087Zinc finger, C2H2
SMARTSM003550.19387409IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286387409IPR007087Zinc finger, C2H2
SuperFamilySSF576671.83E-7387409No hitNo description
PfamPF139121.5E-8387410IPR007087Zinc finger, C2H2
PROSITE patternPS000280389409IPR007087Zinc finger, C2H2
SuperFamilySSF576671.83E-7456483No hitNo description
SMARTSM003554.6461483IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39461488IPR007087Zinc finger, C2H2
PfamPF139121.9E-9461484IPR007087Zinc finger, C2H2
PROSITE patternPS000280463483IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MLEDQEQRYL CRFCSKSFSS GNSLGGHMRG HLALINAEKC VESEDGDLGF DREEVVEEKN  60
DPLLSDMDLD DVGEASYVLR ENPKKSWRIS PSKHGGEIKE MNFCKECGKG FPSLKAVAGH  120
MRSHSIKGKQ ENAVCKECGK LFDSPRALFG HMRSHSKRSK GSSESDYQLV SPVKKKRSTK  180
RYSTVTSHSS ISHSDSFVCF TEVDEVKEVA LCLMMLSRGV NCGDEFSLSM DTAKNCSSAN  240
LESWSSFQKK DDSRSDYGGI EMRKMKMSVG NDIQSTVSGF GNFGSCFDSD DELKSGVDAS  300
DEQSLNCGKF KKTLDTTSIN PVGTKLMDLG TEVGPEKIDM GLQKAKPSNK ASVLYDQCEL  360
NKIFCDELQY ATSASEFSKD NERKGKFMCK ICYKTFKTPQ ALGGHRTTHR TVYSRSTVKE  420
DSPAKVKENS NKVTETDSKL EQLKCDENSA EKDDMTRSKE HECAICFKVF ASGQALGGHK  480
RAHYIGIPVS KGKGIALMEQ DPPDHTDNNL DLNFPATAEE ESSTGVSLNP WWGVNDFECE  540
PLAIFN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217592.10.0PREDICTED: zinc finger protein 354B-like
TrEMBLA0A161ZPL70.0A0A161ZPL7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-19C2H2-like zinc finger protein