PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025451
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 234aa    MW: 26803.9 Da    PI: 7.6071
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025451genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.8e-191360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ll ++++++G g+W++++++ g++R++k+c++rw +yl
      DCAR_025451 13 KGPWTPEEDKLLSEYINLHGDGRWSSVSKYSGLNRSGKSCRLRWVNYL 60
                     79********************************************97 PP
2Myb_DNA-binding52.31.3e-1666110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
      DCAR_025451  66 KGNLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 110
                      6889******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.329864IPR017930Myb domain
SuperFamilySSF466893.2E-3110107IPR009057Homeodomain-like
SMARTSM007175.3E-171262IPR001005SANT/Myb domain
PfamPF002491.6E-181360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231467IPR009057Homeodomain-like
CDDcd001675.47E-131560No hitNo description
PROSITE profilePS5129419.2865115IPR017930Myb domain
SMARTSM007171.2E-1365113IPR001005SANT/Myb domain
PfamPF002491.7E-1466110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2368112IPR009057Homeodomain-like
CDDcd001671.64E-1070111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSCNSGSEQG WRKGPWTPEE DKLLSEYINL HGDGRWSSVS KYSGLNRSGK SCRLRWVNYL  60
RPGLKKGNLT PQEEGIIIEL HALWGNKWST IARYLPGRTD NEIKNYWRTH FKIKTRPYQK  120
QARRRAEGHG MPNNSIQQTA ENVHFMKNDI PATQDDDHGE VNITEKVDIT TPPQGNQEMG  180
FAHPNMTNYY PSSSPMINYY INQEIASCSD TITLDDLWGS FWNLDDPHTG IRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25131157108B-MYB
1h8a_C3e-251311527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217364.11e-177PREDICTED: myb-related protein 340
TrEMBLA0A164U3551e-175A0A164U355_DAUCS; Uncharacterized protein
STRINGXP_010113169.15e-78(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.16e-70myb domain protein 121