PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025578
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 260aa    MW: 28812.9 Da    PI: 7.6924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025578genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000284106123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  DCAR_025578  84 FSCNYCQRKFYSSQALGGHQNAH 106
                  89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-681111No hitNo description
PROSITE profilePS5015711.17784111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDNHVTVGVS PDGDHIGEQK GPNLLWNLSL SDIKDANRNK EEDGADDDDD QTRSSRNTST  60
ELNLINCIDE NLDSTKSNPE PRVFSCNYCQ RKFYSSQALG GHQNAHKRER IINKRGRTTD  120
HTTISMMQYY QNQKMAYTSP PPLHATMFSR SLGVQVHSMI HKPTTSSFPF PRAIPASSLP  180
VHGQYPAWSR KPLEQQPAIG RLAPPDISSG AARFDGGRKI ALTGDGAGEF RWNSSSSSAT  240
LLEKNNQDEF QKLDLSLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216728.10.0PREDICTED: zinc finger protein 3
TrEMBLA0A161X7P60.0A0A161X7P6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-35zinc finger protein 3