PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025661
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 260aa    MW: 28910.5 Da    PI: 9.4998
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025661genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.51.5e-101031401954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yps ++++ LA+++gL+ +qV++WF N R +
  DCAR_025661 103 FEHflHPYPSDADKQLLARQTGLSRNQVSNWFINARVR 140
                  665559******************************98 PP
2BELL43.67.2e-151343972
         BELL 39 avaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                 +v g+gsa p+t+lA+ka+SrhFrcLkdai  qi
  DCAR_025661  1 MVLGYGSAVPFTTLAQKAMSRHFRCLKDAIGAQI 34
                 589***************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075262.8E-9130IPR006563POX domain
PROSITE profilePS5007112.76281144IPR001356Homeobox domain
SMARTSM003891.5E-1084148IPR001356Homeobox domain
CDDcd000861.36E-1284145No hitNo description
SuperFamilySSF466897.27E-1885151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-2987150IPR009057Homeodomain-like
PfamPF059204.2E-19101140IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVLGYGSAVP FTTLAQKAMS RHFRCLKDAI GAQIKKSCEL LGERDAGGTS GVTKGETPRL  60
KLLEQSLRQQ RAFHQMGIME QEAWRPQRGL PERSVNILRA WLFEHFLHPY PSDADKQLLA  120
RQTGLSRNQV SNWFINARVR LWKPMVEDMY QQEETEEREA FHAQTPTPST TTPQDFAATL  180
TAPAASRSEI MRNADNDFSQ LAINKQQQQR FSKNQATYSA EVSQSFAGAA TASGVTGDVS  240
LTLGLRHAGN MPENNSALR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-1790147562Homeobox protein Meis2
3k2a_B2e-1790147562Homeobox protein Meis2
4xrm_A2e-1790147562Homeobox protein Meis2
4xrm_B2e-1790147562Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215302.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_017215303.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ94KL51e-100BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLA0A164U9180.0A0A164U918_DAUCS; Uncharacterized protein
STRINGMigut.H00514.1.p1e-112(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33412139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.32e-98BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]