PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025677
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 304aa    MW: 34287.2 Da    PI: 9.9887
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025677genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.2e-1427116299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  fk+   s+ + ++ l++p++f+ + g++     ++ l+ +++ +W v l  +++ g+ vl++GW eF+    +  g +++Fk++g+s+f  +v+++++
  DCAR_025677  27 FKII-ISHITPHSTLTIPRRFI-AQGYD--LADKVFLKAPESSVWVVDL--ERTTGEAVLRNGWPEFAAYYSISIGHVILFKYEGNSQF--HVTILDN 116
                  5555.577788899*******9.55555..4458***************..**********************************9***..9999987 PP
2B339.87.8e-13205295598
                  -..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   5 ltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    ps+v  + + + +   f e++++ k +  +lt  +   r+W+ ++  r +s +y ++kGW +F+++  L +gD++vF+l+++s++ + v ++r
  DCAR_025677 205 VYPSHVDGTqHGMHVTTAFKEAYENWKDN-EQLT-LQIAERTWQAEC--RWTSIGYKIGKGWCKFARDTSLATGDVCVFELVNSSQKLFEVIIYR 295
                  55565544437788888888888443322.2455.45688*******..888889**************************98777756666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-1818118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-1621117IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-1324115No hitNo description
PROSITE profilePS5086312.60525117IPR003340B3 DNA binding domain
PfamPF023629.4E-1126116IPR003340B3 DNA binding domain
SMARTSM010193.7E-926117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-17193297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-16196295IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-12199295No hitNo description
SMARTSM010190.012201297IPR003340B3 DNA binding domain
PROSITE profilePS5086311.321202297IPR003340B3 DNA binding domain
PfamPF023624.6E-11204295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKNRRIVRGA PMDPLRSSSA VKPRCFFKII ISHITPHSTL TIPRRFIAQG YDLADKVFLK  60
APESSVWVVD LERTTGEAVL RNGWPEFAAY YSISIGHVIL FKYEGNSQFH VTILDNSCTE  120
IEYPMSASHN EQANRSGGFR KRKEQALITS KEGRKIKGTG IVKPDTVIPS QAKGASESAI  180
EEGKARALAL AKAFKSNKPF FFRRVYPSHV DGTQHGMHVT TAFKEAYENW KDNEQLTLQI  240
AERTWQAECR WTSIGYKIGK GWCKFARDTS LATGDVCVFE LVNSSQKLFE VIIYRATVKN  300
ENW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217387.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A161ZML60.0A0A161ZML6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-24B3 family protein