PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025680
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 262aa    MW: 29922.9 Da    PI: 8.443
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025680genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.41.1e-121771799
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 ++pk+f+++h++k      + l+ + +  W v +   +++g+++l++GW eF+    L  g ++vF+  ++s+f  +v+vf++
  DCAR_025680  1 MIPKEFVKNHKEK--LRGRVHLKATGSAPWPVDV--VRTKGEVWLQNGWPEFATFYSLSFGSVLVFESFKKSKF--RVRVFDQ 77
                 69*****999766..3447***************..9******************************4444555..9999997 PP
2B340.26.2e-13166246489
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     ps+v +sg + + ++f+e++ + ++++ +++++   +++W + +  + +++r++l ++Wk+F k+n L++ D++vF+l++  +
  DCAR_025680 166 NIRPSYVIRSG-VDVRRSFLETYTKWEKRG-QVIFRV-GNETWPIGY--TLCGERCTLNTNWKKFLKDNSLEVDDVCVFELIDPAR 246
                  45678888887.999********5444444.455554.779******..89999999***********************997433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.46E-10176No hitNo description
PfamPF023621.3E-9177IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-15178IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.83178IPR003340B3 DNA binding domain
SMARTSM010190.019178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-15278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-18155257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-17156255IPR015300DNA-binding pseudobarrel domain
CDDcd100175.17E-10161254No hitNo description
PROSITE profilePS508639.953162257IPR003340B3 DNA binding domain
SMARTSM010191.1E-6163257IPR003340B3 DNA binding domain
PfamPF023626.8E-11164246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MIPKEFVKNH KEKLRGRVHL KATGSAPWPV DVVRTKGEVW LQNGWPEFAT FYSLSFGSVL  60
VFESFKKSKF RVRVFDQSAT EINYPLNRDL SLDDGESVPQ VRKREAEIGG SSKKTRSSTE  120
EAFHDELNLK QEEANGDGGS ASKEEIERVV NLAAAFESEN PFFVINIRPS YVIRSGVDVR  180
RSFLETYTKW EKRGQVIFRV GNETWPIGYT LCGERCTLNT NWKKFLKDNS LEVDDVCVFE  240
LIDPARKLFN VIVYQPKREA A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215171.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A164U9N70.0A0A164U9N7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-17B3 family protein