PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025729
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 695aa    MW: 77468.3 Da    PI: 7.939
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025729genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-15148238199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k l++s+v++  ++ lp +f++ h   +++++ l+lede+g + e+k+i +k++    l++GW++F+  ++L egD+++F+l++    +++v v+r
  DCAR_025729 148 FVKLLVRSHVSSCFWMGLPMPFCKFHL--PNRDVVLILEDENGDRAELKYIAEKTG----LSAGWRKFAVGHKLLEGDVLLFHLVE--PLKFKVYVVR 237
                  89*********************9885..358899***************777777....***********************986..4445787777 PP

                  S CS
           B3  99 k 99 
                  +
  DCAR_025729 238 Q 238
                  5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-22142239IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-17143239IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-22146237No hitNo description
SMARTSM010193.2E-20148239IPR003340B3 DNA binding domain
PfamPF023622.1E-13148238IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449148239IPR003340B3 DNA binding domain
TIGRFAMsTIGR015711.5E-31560662IPR006461PLAC8 motif-containing protein
PfamPF047491.1E-25561659IPR006461PLAC8 motif-containing protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MKLKVVSRGV VSVSLPLPNP GPDNTNVTNN DNNNIGCDEE FIKKEAPDNE QGLVLALFTP  60
DLDKSLPSSS TTPPCQGKAI VKSRDLNDLR LTLPAKRKTK PSSKSKLALS DMPIRIVREK  120
ATPPQFKSAT VIRAEEMQAG LGSEFPSFVK LLVRSHVSSC FWMGLPMPFC KFHLPNRDVV  180
LILEDENGDR AELKYIAEKT GLSAGWRKFA VGHKLLEGDV LLFHLVEPLK FKVYVVRQNE  240
LTDVDGALSL LNLDVKTKQP QPEGGSFSRL KTLLIRKRKR PSASALIQKK NKKMLVSRSV  300
RDLGQLREQS GNDSEEFGSE VLEGSKLSKT LVPFKDVKSF EDFHIVVNDL CIDSELPEHI  360
RLKYYELCCK KNAFLHSRFL PGLYSKLAAG IIGETVNIAD AIKSCKLTTS WDEFAVWEKS  420
LKSFELLGMK VGFIRHRMHT LRGLAFETQG ASDFKNYLGA ISKRIHAEDE IRNLEAKLVE  480
LKAACENYDA DIEMLRSKAE KHESEFQEES ITAKDMHPPN DYTKYAAPGY PSAPMSIPPA  540
QLYPSFGVHV PTPTPNTLGK WSTNLCHCFD DPVNCLVTCI CPCVTFGQIA EIITQGETSC  600
LASGGIYGVL LGVTGFACLY SCFYRSRMRG QYELEEAPCE DCVLHLCCET CALCQEYREL  660
KNRGFDMGIG WEANMNRQQG RATTVAPFQG TMRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215314.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A164UB470.0A0A164UB47_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000407861e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-39B3 family protein