PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025732
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HSF
Protein Properties Length: 239aa    MW: 26162.6 Da    PI: 7.0094
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025732genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind23.51.5e-07175852102
                   HHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  52 SFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                   S+    n  gF+k+ +e+         weFk+++Fkkg+kell +i+r++ 
   DCAR_025732  17 SYACVFNFHGFRKIVQEK---------WEFKNENFKKGEKELLLQIQRRRI 58 
                   344445566666666555.........*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004471.4E-51456IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-51556IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEGAIFSRLD LFPSFVSYAC VFNFHGFRKI VQEKWEFKNE NFKKGEKELL LQIQRRRIEN  60
RSLALTVNTG NSGSPTAGQT TPANSEVDLV SGSTSHISLP KNTVIIDLAM VHQYEAISKE  120
HERLKILHEQ VCSELAESRI KCEELTGILL QQREVGSEMK SQSCGSTAGA VCVGDKGKSV  180
NVVNGGDQND DEDPKNVKIF GVMMKQEKKR GGDEIFDSCG GSSGNKERKM GGEKVGTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217400.11e-157PREDICTED: heat shock factor protein HSF24-like
TrEMBLA0A164UB791e-175A0A164UB79_DAUCS; Uncharacterized protein