PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025738
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 169aa    MW: 18739.9 Da    PI: 10.6486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025738genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-0969111754
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++ r+RR+ri +++  L++l+P       +K++ a++L +Av+Y+k L
  DCAR_025738  69 IAARQRRERISEKIRILQRLVPGG-----TKMDTASMLDEAVHYMKFL 111
                  677*******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.63762111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1463121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.20E-1264116No hitNo description
SuperFamilySSF474597.98E-1566122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-1468117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-769111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSQILPQNCP MPTQAFNSSE AVMAKTNSME SMREMMFRMA AMQPIQIDPE SVKPPQRRNV  60
KISKDPQSIA ARQRRERISE KIRILQRLVP GGTKMDTASM LDEAVHYMKF LKKQVQSLER  120
AATTSYRPMG NAGYPGTVAA AAMNMNYSAL ARPCQPAAHM VGSMQMLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17176RQRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217775.11e-120PREDICTED: transcription factor HEC2
SwissprotQ9SND46e-44HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A161X8301e-120A0A161X830_DAUCS; Uncharacterized protein
STRINGXP_008241488.12e-66(Prunus mume)
STRINGEMJ051572e-66(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.14e-38bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]