PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_025785

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 204aa MW: 22246.5 Da PI: 8.7776

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_025785	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.9	4.5e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l p++ p++q +++ +v+k+FG++ ++++++a+p+ +r+++++sl++eA r+ +Pv+Gavg++++++++++q+++e DCAR_025785 2 SCNGCRVLRKGCSENCILQPCLqwiqtPEAQGHATVFVAKFFGRAGLMSFISAVPHPQRPALFQSLLFEAAGRTVNPVNGAVGLLSSGNWHICQAAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l+ DCAR_025785 100 TVLR 103 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.495	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILQ PCLQWIQTPE AQGHATVFVA KFFGRAGLMS FISAVPHPQR 60 PALFQSLLFE AAGRTVNPVN GAVGLLSSGN WHICQAAVET VLRGGALRPL TDLESSSSEC 120 TDILKLKDST STSRLRVEKR RRYEPEMKLP DPSPNFSGAN LPAKMTLEKR RSETPSRTSE 180 ESVTTSCYES GSGLREVKLL NLF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	142	EKRRRY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017216412.1	1e-149	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	2e-72	LBD37_ARATH; LOB domain-containing protein 37
Swissprot	Q9SZE8	2e-72	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A161ZQH1	1e-147	A0A161ZQH1_DAUCS; Uncharacterized protein
STRING	Solyc02g092550.2.1	1e-87	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	6e-72	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	DCAR_025785

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]