PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025834
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 255aa    MW: 27609.2 Da    PI: 8.3912
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025834genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-18104158256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tk q   Lee F+  ++++ ++++eLA++l+L  rqV vWFqNrRa+ k
  DCAR_025834 104 RKKLRLTKAQSALLEESFKHLSTLNPKQKQELARELKLRPRQVEVWFQNRRARTK 158
                  678899***********************************************98 PP
2HD-ZIP_I/II121.25.2e-39104193191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+k q++lLEesF++ ++L+p++K+elareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  DCAR_025834 104 RKKLRLTKAQSALLEESFKHLSTLNPKQKQELARELKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTDENRRLQKELQELK-AL 193
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.1E-1793161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-1799163IPR009057Homeodomain-like
PROSITE profilePS5007116.811100160IPR001356Homeobox domain
SMARTSM003895.2E-14102164IPR001356Homeobox domain
PfamPF000461.3E-15104158IPR001356Homeobox domain
CDDcd000861.50E-15104161No hitNo description
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
PfamPF021831.8E-10160194IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.5E-25160203IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGFDNVCNTG LVLGLGLSSE TTAPARPTPK MAVSMGSEPD LTLGLISGAP YKVVDSGGAD  60
SGGSSFSSVK REREIGSFEE VETTVVDHKA RGVSDEDDDG GNGRKKLRLT KAQSALLEES  120
FKHLSTLNPK QKQELARELK LRPRQVEVWF QNRRARTKLK QTEVDCEYLK KCCETLTDEN  180
RRLQKELQEL KALKVSQPLY MQLPAATLTM CPSCERVGGG AGGTTDTSSK SPRACPFGSK  240
PHFYNPFTSS SAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152160RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215702.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like isoform X2
SwissprotP466041e-86HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A161Y8I80.0A0A161Y8I8_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000551991e-108(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-76HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]