PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025931
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 266aa    MW: 30011.1 Da    PI: 10.0692
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025931genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.1e-09149199146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46 
                      +++WT eE+  l+ +vk++  g W+tI +         +g +  ++k++w++
      DCAR_025931 149 KQKWTSEEEVALKAGVKKHDAGKWRTILKDPEfsgvlyLG-STVDLKDKWRN 199
                      79***************************99999999877.66799999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.31E-12146214IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-10147200IPR009057Homeodomain-like
SMARTSM007170.0021148203IPR001005SANT/Myb domain
PROSITE profilePS500906.226149201IPR017877Myb-like domain
CDDcd116607.91E-16150200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MNLIIRNLVQ RNQDVILLET FSVNFGKSPC TRKMDQCILR KLQTNGERMV PLAKLRNVRT  60
SGAASTQTHP MRLDMMRMSG MKEFGSKSIT LAAMMWCSRN HQRIYTKVVV FLSVEGVACT  120
LMVVSLFKEF GHVVVLSGTC ELLPMGAPKQ KWTSEEEVAL KAGVKKHDAG KWRTILKDPE  180
FSGVLYLGST VDLKDKWRNM SVIADGWGSR EKARLALKRM HQSSKDDDNF MALAHLDQSD  240
EELFNEQPLA TSMVPLHRLV VLRDL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A161XN530.0A0A161XN53_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1951023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-45telomere repeat binding factor 1