PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_025934

Common Name

AREB1

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 309aa MW: 32208.3 Da PI: 5.6977

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_025934	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.6	5.6e-13	249	283	1	35
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekv 35 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ + DCAR_025934 249 ERELKRQKRKQSNRESARRSRLRKQAECEELQGRE 283 89******************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	2.8E-24	11	82	IPR012900	G-box binding protein, multifunctional mosaic region
Gene3D	G3DSA:1.20.5.170	1.2E-11	244	283	No hit	No description
SMART	SM00338	4.3E-5	249	308	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.6E-12	249	285	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.864	251	282	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.55E-7	252	285	No hit	No description
CDD	cd14702	3.22E-16	254	284	No hit	No description
PROSITE pattern	PS00036	0	256	271	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0010629	Biological Process	negative regulation of gene expression
GO:0090342	Biological Process	regulation of cell aging
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MIYLPRGIDE EVQTPPSYPD WSSSMQAYYG AGAAPAFYAS TVAPPTPHPY MWGGQHPLMP 60 PYGTPIPYPV YPPGGMYAHP SIATNPSMVP TAESEGKAVD GKDRNPTKKS KGASGNASSG 120 GGKAGDSGKA ASSSGNDGGT QSAESGSDGS SDGGSDENTN HEFSTGKKGS FHQMLADGAS 180 AQNTVAGSVP GNALVSVPAA NLNIGMDLWN ASPAGNGSLK VRQNPSAAVV PGTVMGRDAM 240 MPDQWVNDER ELKRQKRKQS NRESARRSRL RKQAECEELQ GREELIRVYG ADEVSKLGIQ 300 SFDDGGDS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	271	RRSRLRK
2	265	272	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00039	PBM	Transfer from AT4G36730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU433292	0.0	EU433292.1 Daucus carota isolate WD966403 ABA response element-binding factor 1 (AREB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017219324.1	0.0	PREDICTED: G-box-binding factor 1-like isoform X2
Swissprot	P42774	1e-67	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A161Y8T2	0.0	A0A161Y8T2_DAUCS; Uncharacterized protein
STRING	XP_004143501.1	1e-124	(Cucumis sativus)
STRING	XP_004172454.1	1e-124	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3780	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	9e-48	G-box binding factor 1

Link Out ? help Back to Top
Phytozome	DCAR_025934

Publications ? help Back to Top
Guan Y,Ren H,Xie H,Ma Z,Chen F Identification and characterization of bZIP-type transcription factors involved in carrot (Daucus carota L.) somatic embryogenesis. Plant J., 2009. 60(2): p. 207-17 [PMID:19519801] Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]