PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025935
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 212aa    MW: 24638.5 Da    PI: 6.6875
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025935genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.4e-1955106556
                  SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++++eq++ Le +F++++++  e++ +LA++lgL+ rqV vWFqNrR+++k
  DCAR_025935  55 RKLSDEQVNMLELHFQNEHKLESERKDRLAAELGLDPRQVAVWFQNRRTRYK 106
                  5899**********************************************99 PP
2HD-ZIP_I/II111.65.1e-3653144293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+ls+eqv++LE +F++e+kLe+erK +la eLgl+prqvavWFqnrR R+k+k+lE++y++Lk+++++ + e+++L++ev +L+e+l+e
  DCAR_025935  53 RKRKLSDEQVNMLELHFQNEHKLESERKDRLAAELGLDPRQVAVWFQNRRTRYKSKKLEEEYSRLKSEHENAVFEKCQLKTEVLKLKERLSE 144
                  8**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.87648108IPR001356Homeobox domain
SMARTSM003891.1E-1851112IPR001356Homeobox domain
SuperFamilySSF466897.27E-1852117IPR009057Homeodomain-like
CDDcd000861.62E-1453109No hitNo description
Gene3DG3DSA:1.10.10.602.2E-1955115IPR009057Homeodomain-like
PfamPF000462.1E-1655106IPR001356Homeobox domain
PRINTSPR000311.7E-57988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000311.7E-588104IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSSSLNNQFD DQMVVLNHYY PDVYTQVASV QGSETKPRRR RKNNKAESNS GFRKRKLSDE  60
QVNMLELHFQ NEHKLESERK DRLAAELGLD PRQVAVWFQN RRTRYKSKKL EEEYSRLKSE  120
HENAVFEKCQ LKTEVLKLKE RLSENEEKMQ KLLEQSNGAS SNSPSSSFSA EIMEPPFLGG  180
FGMEGLESVF CVTGNNYDTT GMEYWHNFYD I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13955RRKNNKAESNSGFRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215861.11e-157PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotO232087e-60ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
SwissprotQ9ZU708e-60ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A161ZQV21e-156A0A161ZQV2_DAUCS; Uncharacterized protein
STRINGSolyc02g085630.2.11e-73(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-59homeobox protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]