PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025948
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 80aa    MW: 9101.2 Da    PI: 9.1228
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025948genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-101558344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +l+ +a +++ ++   +W+ Iar +g  +t++++k ++
      DCAR_025948 15 HWTPKQNKLFEKALAKYDKDtpdRWHNIARAVG-DKTAEEVKRHY 58
                     5********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.6891166IPR017884SANT domain
SMARTSM007178.8E-91264IPR001005SANT/Myb domain
PfamPF002495.4E-81558IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-131570IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-61568IPR009057Homeodomain-like
CDDcd001679.92E-81658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MAPSSLSSSR SSSCHWTPKQ NKLFEKALAK YDKDTPDRWH NIARAVGDKT AEEVKRHYEI  60
LVEDLRHIES GTVPFPSYR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-32679174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649137.17e-43PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1733e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A161X8J33e-52A0A161X8J3_DAUCS; Uncharacterized protein
STRINGVIT_04s0023g01910.t015e-40(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-33RAD-like 6