PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026040

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 93aa MW: 10406.9 Da PI: 8.4671

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026040	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.2	1.2e-07	16	55	16	54
HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++ +L+ l+P +s+ + +++s + iL+++++YIk+L DCAR_026040 16 LKELVLKLQALVPAeSSSRSTTRVSSSKILKETCNYIKKL 55 55566689999999555777777***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.07	1	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-8	14	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-8	14	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.1E-5	17	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MSKRITGATR ITDDELKELV LKLQALVPAE SSSRSTTRVS SSKILKETCN YIKKLHKEVD 60 DLSTRLTYLL DSMDSNSVDV ETLRSLLQQS YI*

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269\|PubMed:16527868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021651758.1	3e-29	transcription factor PRE3-like
Swissprot	Q9LJX1	2e-24	PRE5_ARATH; Transcription factor PRE5
TrEMBL	A0A164UJK8	3e-57	A0A164UJK8_DAUCS; Uncharacterized protein
STRING	VIT_17s0000g05950.t01	4e-28	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA353	24	161

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28857.1	1e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_026040