PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026049
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 205aa    MW: 23033.9 Da    PI: 8.7142
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026049genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-181479148
                     TSSS-HHHHHHHHHHHHHTTTT...................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...................tWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd+ l+ +v++ G+                    +W++Ia++++ gRt++++k++w+k+l
      DCAR_026049 14 RGQWSPEEDLVLASYVQENGSCnwqyvpkntvfiliyayicRWAAIANHLP-GRTDNDIKNHWNKHL 79
                     89*************************************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.264983IPR017930Myb domain
SMARTSM007171.5E-101381IPR001005SANT/Myb domain
PfamPF002492.8E-161479IPR001005SANT/Myb domain
SuperFamilySSF466892.33E-121480IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-191580IPR009057Homeodomain-like
CDDcd001672.66E-111779No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRPLMGKES VASRGQWSPE EDLVLASYVQ ENGSCNWQYV PKNTVFILIY AYICRWAAIA  60
NHLPGRTDND IKNHWNKHLK KIAEITQDNY SDKHRYGSSS NVTTNARHQA PSHTTTLPLV  120
SLGLRSPPST VATGPLLSPD CMSFKSSCGR NLRAHRSLAD PANHDQFRSQ AAPVTPTFSY  180
PHEPYVFNCE NIAIWLQMWN KQDH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215454.11e-138PREDICTED: transcription factor MYB30-like isoform X1
RefseqXP_017228148.11e-138PREDICTED: transcription factor MYB30-like
TrEMBLA0A164UJU71e-153A0A164UJU7_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.12e-21myb domain protein 96