PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026095

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

MYB_related

Protein Properties

Length: 264aa MW: 28645.1 Da PI: 8.4926

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026095	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.2	2.2e-14	67	111	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky DCAR_026095 67 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 111 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.997	60	116	IPR017930	Myb domain
SuperFamily	SSF46689	3.74E-17	62	117	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-17	63	114	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	64	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-11	66	111	IPR009057	Homeodomain-like
CDD	cd00167	1.12E-9	67	112	No hit	No description
Pfam	PF00249	1.4E-11	67	111	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MMSRSSQAPV AAGEDGSGEI MLFGVRVKEL NNSAAVEAAG AGAGYASADD VVHHQSTASR 60 ERKRGVPWTE EEHKLFLLGL QKVGKGDWRG ISRNFVKTRT PTQVASHAQK YFLRRSNLNR 120 RRRRSSLFDI TTDSVTAIPM EEENVHQDNV APCVMQSPYP GSFGPVLFSK QVENLSGNQT 180 AKFAGQVNDA PSMLSDSVSA LPLIKSPAPS TSVDNNERFS MDDPMLSLNL SLSSGHHDQL 240 SSRHPVYQVA RNFSIGDSMI SVV*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017219907.1	1e-157	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	6e-61	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A161ZR74	0.0	A0A161ZR74_DAUCS; Uncharacterized protein
STRING	EMJ10609	7e-66	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70000.2	4e-39	MYB_related family protein

Link Out ? help Back to Top
Phytozome	DCAR_026095

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]