PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026126

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 201aa MW: 22276.7 Da PI: 8.6367

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026126	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.5	1e-07	25	74	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 + +Er+RR +++ +L +l+P+ + +ps+ ls + L ++ YIk+L DCAR_026126 25 KTVERNRRIHMKGLCLRLTSLVPPhYF-NPSRElLSQQAQLDQTAAYIKEL 74 679*******************665.777777*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.01	19	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.34E-4	19	78	No hit	No description
SuperFamily	SSF47459	2.22E-9	23	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-9	23	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-4	25	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MMGEVMNFSA AASPGSATRS KLDRKTVERN RRIHMKGLCL RLTSLVPPHY FNPSRELLSQ 60 QAQLDQTAAY IKELKERIDE LKVKKQLLTP MSSSSHTSSP ASSSFIVPVV ELRELGSSNI 120 EVVVVSGLAK NFRLCDVISV LQEEGTDVIS INVSSVGDRV FHTLHAQVKV CRVGVDITRV 180 WQRLQELMSL AYLCEDAQSY *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017216185.1	1e-146	PREDICTED: uncharacterized protein LOC108193859
TrEMBL	A0A164ULL6	1e-145	A0A164ULL6_DAUCS; Uncharacterized protein
STRING	VIT_17s0000g08150.t01	5e-65	(Vitis vinifera)
STRING	cassava4.1_017345m	5e-65	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6083	14	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	6e-21	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_026126