PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026208

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 279aa MW: 32184.9 Da PI: 9.5676

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026208	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	112	135	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C ksF++ +L +H+ + H DCAR_026208 112 WRCGYCRKSFRSEKYLDQHLGNrH 135 58*****************96655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.099	112	137	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	114	135	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MGKIKVIKTH VSLFLILLFQ ASIPVFSISE PSNQAQEEDA ASRVHRHNEE NADEVHCSRK 60 RSRAAWKITE EYLMPFVERE KYQLSQHCRL HPDNDIFRDQ EQNKIHVDIN EWRCGYCRKS 120 FRSEKYLDQH LGNRHSNLLN TSHSKCLADL CGALHCDLVM DTKSRKSKCN PAAAARNKHL 180 CEGLADKCFP VNHGPSAHRL HEIFLRQFCD AHTCSGGHKP FSRGGKKHTS IFYLAISILT 240 LMLVPLFYVI VYLYQREMRK DSQAFKRISR RGQKPKPS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017216069.1	0.0	PREDICTED: uncharacterized protein LOC108193766 isoform X1
TrEMBL	A0A161X983	0.0	A0A161X983_DAUCS; Uncharacterized protein
STRING	VIT_17s0000g10170.t01	1e-141	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8084	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-114	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	DCAR_026208