PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026218

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 113aa MW: 13130.9 Da PI: 5.3126

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026218	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	26.5	1.8e-08	1	53	45	97
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 ++k++ +++r + ++sl +eAe r dP++G g++++ +q+e+ k+ ++ll DCAR_026218 1 MVKNITPDKRLEFIRSLEFEAEYRSVDPINGYKGLVNQNVEQIEEYKKSIKLL 53 689999****************************************9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.6E-5	1	52	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	8.938	1	57	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MVKNITPDKR LEFIRSLEFE AEYRSVDPIN GYKGLVNQNV EQIEEYKKSI KLLIEQAKHL 60 RSIEHHREKI AAAEEKIRQL ENIVVTQFQK IGEIYDDENK PEVKEVAGED HA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A161X993	5e-74	A0A161X993_DAUCS; Uncharacterized protein

Link Out ? help Back to Top
Phytozome	DCAR_026218