PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026289
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CO-like
Protein Properties Length: 347aa    MW: 38358.4 Da    PI: 4.887
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026289genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box33.11.1e-102167242
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 + ++C+ +e+ ++ + C+ +   lC++C  e+H+       H++vp+
  DCAR_026289 21 RVWICEACERAPAAFICKADAASLCANCDAEIHSAnplasrHQRVPV 67
                 5789*****************************66999999*99986 PP
2CCT69.21.1e-23277320144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRYkeK+k+RkF K+irY+sRKa+Ae+RpR+KGrF+k++
  DCAR_026289 277 REARVLRYKEKKKNRKFVKTIRYASRKAYAETRPRIKGRFAKRT 320
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.1E-162067IPR000315B-box-type zinc finger
PROSITE profilePS5011910.9362067IPR000315B-box-type zinc finger
PfamPF006433.0E-82267IPR000315B-box-type zinc finger
CDDcd000211.31E-102367No hitNo description
PROSITE profilePS5101716.162277319IPR010402CCT domain
PfamPF062031.6E-17277319IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MFKEEQISIH AANEAALQND RVWICEACER APAAFICKAD AASLCANCDA EIHSANPLAS  60
RHQRVPVAPI PCSVYGPQAA KGSVLGLGGD DTDDEESEAV SWLINPGKNN SEQLTNGLFF  120
GGEAVDEYLD FVDFSSCQDN DNQYTGGQQY DVPQKSYGDQ SEQYNDQQNY FVPRKSYAGD  180
SVVPVQNGQV KIHQFQPQPK QNQTFQLDLE YETSNTGYGY PPSLSHSVSV SSMDVGVVPE  240
STMLDVSIPH SRLSAGTNDI YSTPPIQTPT QLSPMDREAR VLRYKEKKKN RKFVKTIRYA  300
SRKAYAETRP RIKGRFAKRT DTEVEVDQMF SSNFIAATGY GIVPSY*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215757.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-99COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A164UQD00.0A0A164UQD0_DAUCS; Uncharacterized protein
STRINGXP_002532886.11e-124(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.14e-87CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]