PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026342
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 230aa    MW: 24872.7 Da    PI: 7.1631
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026342genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.4e-1872120153
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                  + y+GVr ++ +g+Wv+eIr p++   ++r++lg++ tae+Aa+a++ a++  
  DCAR_026342  72 PVYRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTYPTAEMAARAHDVAALTV 120
                  68*****998.**********843...6*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-1372121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3173131IPR001471AP2/ERF domain
PROSITE profilePS5103223.11773130IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-2173131IPR016177DNA-binding domain
SMARTSM003801.7E-3473136IPR001471AP2/ERF domain
PRINTSPR003671.3E-107485IPR001471AP2/ERF domain
CDDcd000184.00E-3174130No hitNo description
PRINTSPR003671.3E-1096112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAAGGQLDPA PDSLSGQTKH IPYISNTISD SSKQNKKSNS NDHASDLLSS QTKRTQCIPS  60
KRNTSSSKSK HPVYRGVRMR SWGKWVSEIR QPRKKTRIWL GTYPTAEMAA RAHDVAALTV  120
KGGAAILNFP QLAHSLPRPE SVSPRDVQAA AAKAAAMSSS SSSSPSSVFD HESYELGLGE  180
ITELPSLNVE KESSDEVLLV DSPDMWLYPA PSWAEETELD GYLISGEFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-18691311073Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217635.11e-168PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9LYD32e-52DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A164URT51e-167A0A164URT5_DAUCS; Uncharacterized protein
STRINGXP_008220077.11e-54(Prunus mume)
STRINGEMJ269731e-54(Prunus persica)
STRINGXP_004291182.11e-54(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]