PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026350
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 379aa    MW: 41441.7 Da    PI: 6.5156
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026350genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.5e-12103147347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
      DCAR_026350 103 PWTEEEHRMFLLGLQKLGKGDWRGISRNFVISRTPTQVASHAQKY 147
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.72396152IPR017930Myb domain
SuperFamilySSF466891.64E-1698152IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1899151IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.7E-11100146IPR009057Homeodomain-like
SMARTSM007175.0E-11100150IPR001005SANT/Myb domain
CDDcd001676.81E-9103148No hitNo description
PfamPF002492.5E-10103147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RPGGPTAPGV RLFGVRLTDG SIIKKSASMG NLSAFSAVSP  60
NPPGSPCDAL LDPTHVPDEY LSDDPAHASC STNRRVERKK GTPWTEEEHR MFLLGLQKLG  120
KGDWRGISRN FVISRTPTQV ASHAQKYFIR QTNSTRRKRR SSLFDMVTDT PPVVEEQFML  180
PPQAVETDKK SSLPSLVLTP PVVEEQFMLP PQAIENDKKN SLPSLGLSLK TDYGSTEDTH  240
MEDPRAEMVE DIKESVTTQA EAEIQQVIPS FYPAYIPVTF QLWPSSASIL EEEKGTEASH  300
HEVLKPIAVL RKEPVNVDEL VGMSQLSIGE TDTSRMEPSA LTLKLLGEPS RQSAFHPSTP  360
VSASDVSKGN GSSVIQAV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215892.10.0PREDICTED: transcription factor MYB1R1
TrEMBLA0A164US030.0A0A164US03_DAUCS; Uncharacterized protein
STRINGevm.model.supercontig_2092.11e-147(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117701922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.14e-97MYB_related family protein