PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026357

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

SBP

Protein Properties

Length: 1086aa MW: 119851 Da PI: 7.7383

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026357	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.6	9.8e-40	167	243	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C++dls+ak+yhrrhkvCevhska++++v +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+ rrk+q+ DCAR_026357 167 CQVDDCKEDLSTAKDYHRRHKVCEVHSKATKAIVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRGRRKTQP 243 **************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.0E-34	161	228	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.205	164	241	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.57E-36	165	245	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.7E-29	167	240	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1086 aa Download sequence Send to blast
MEEVGTQVAS SHYIHQSLSK HFLDSQHHPM AAAKKRSMPF HPLGFHLPQS QQQQPMFGSG 60 FQQSRGQWHP NGWDWDSAKF LAKPVESDVI RGGPSTMSVQ SVMQRSHGDE IIAGNSVDLR 120 GNHVVEDDEN LLLELRGSRV NFSEENVLRP NKRVRSGSPA GGNYPKCQVD DCKEDLSTAK 180 DYHRRHKVCE VHSKATKAIV GKQMQRFCQQ CSRFHPLSEF DEGKRSCRRR LAGHNRGRRK 240 TQPDDVTSKF LPPTNRENVS NGDVDLVNLL AILARAQGNT EDSSINGSSI PNKDQFIQIL 300 QKINSLPLPA DFAAKLPPLG VTSNIAPFQS ESENKLNGNN SPSSTLDLLA VLSGNQAGSS 360 PDATAVPSQR SSHGSDSEKT RSPCTNMQTR HQNEFVSVGE RSSTSYQSPT ECSDGQVQEI 420 RTNLPLQLFS SSPESDSPPK LASSTKYFSS GSSNPMEERS PSSSPPFVQK LFPTVSSREA 480 VNPKRLLNRL EFNGSSKAGK DKGCSTSLDL FGGTNKCVDD SSVQSLPYQA GYTSSSGSDH 540 SPSSLNSDAQ NRSGRIYFKL IDRDPSQLPG KLRTQIFNWL GQSPSEMESY IRPGCVVLSI 600 YISMPSSAWE QLEENLLQNI TSLVQDSEDP FWRKGRFLVN TGRQLASYQD GKAHLRKATR 660 AWSFPEVVSV SPLAVVGGQE TTILLKGRNL SDQYTKVFCT HAVGYKLEET SGSASDDTTY 720 DSITLRNFTV ADEAPGILGR CFIEVENGFR GTSFPIIIAN ATICKELNLL ESAFDKVAAP 780 RDAISEESFL DSGRPISRED VLHFLNELGW VLQRKRYMSM FEVPEYKLHR FKFLFIFSVE 840 HDFCALVKTL LDVLLEICLG RDELSRESLQ MLLEIHLLNR AVKMRSRKMV DLLINYFVPT 900 DSGKTYIFLP NLAGPGGITP LHLAACMSDA NSMVDTLTTD PLEIGLHGWD SLLDANGLSP 960 CAYAQMRNNH SYNALVARKL VDRKNGQVSV PVGDEIQEQS LIAGQIHQAS FQIRQGQRSC 1020 SKCAVGAARY NRKTSASQGL LHRPYIHSML AIAAVCVCVC LFLRGAPDIG LVAPFKWENL 1080 GYGAV*

Sequence ? help Back to Top

Protein Sequence Length: 1086 aa Download sequence Send to blast

MEEVGTQVAS SHYIHQSLSK HFLDSQHHPM AAAKKRSMPF HPLGFHLPQS QQQQPMFGSG  60
FQQSRGQWHP NGWDWDSAKF LAKPVESDVI RGGPSTMSVQ SVMQRSHGDE IIAGNSVDLR  120
GNHVVEDDEN LLLELRGSRV NFSEENVLRP NKRVRSGSPA GGNYPKCQVD DCKEDLSTAK  180
DYHRRHKVCE VHSKATKAIV GKQMQRFCQQ CSRFHPLSEF DEGKRSCRRR LAGHNRGRRK  240
TQPDDVTSKF LPPTNRENVS NGDVDLVNLL AILARAQGNT EDSSINGSSI PNKDQFIQIL  300
QKINSLPLPA DFAAKLPPLG VTSNIAPFQS ESENKLNGNN SPSSTLDLLA VLSGNQAGSS  360
PDATAVPSQR SSHGSDSEKT RSPCTNMQTR HQNEFVSVGE RSSTSYQSPT ECSDGQVQEI  420
RTNLPLQLFS SSPESDSPPK LASSTKYFSS GSSNPMEERS PSSSPPFVQK LFPTVSSREA  480
VNPKRLLNRL EFNGSSKAGK DKGCSTSLDL FGGTNKCVDD SSVQSLPYQA GYTSSSGSDH  540
SPSSLNSDAQ NRSGRIYFKL IDRDPSQLPG KLRTQIFNWL GQSPSEMESY IRPGCVVLSI  600
YISMPSSAWE QLEENLLQNI TSLVQDSEDP FWRKGRFLVN TGRQLASYQD GKAHLRKATR  660
AWSFPEVVSV SPLAVVGGQE TTILLKGRNL SDQYTKVFCT HAVGYKLEET SGSASDDTTY  720
DSITLRNFTV ADEAPGILGR CFIEVENGFR GTSFPIIIAN ATICKELNLL ESAFDKVAAP  780
RDAISEESFL DSGRPISRED VLHFLNELGW VLQRKRYMSM FEVPEYKLHR FKFLFIFSVE  840
HDFCALVKTL LDVLLEICLG RDELSRESLQ MLLEIHLLNR AVKMRSRKMV DLLINYFVPT  900
DSGKTYIFLP NLAGPGGITP LHLAACMSDA NSMVDTLTTD PLEIGLHGWD SLLDANGLSP  960
CAYAQMRNNH SYNALVARKL VDRKNGQVSV PVGDEIQEQS LIAGQIHQAS FQIRQGQRSC  1020
SKCAVGAARY NRKTSASQGL LHRPYIHSML AIAAVCVCVC LFLRGAPDIG LVAPFKWENL  1080
GYGAV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-29	157	240	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017218515.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A161ZP29	0.0	A0A161ZP29_DAUCS; Uncharacterized protein
STRING	VIT_18s0122g00380.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12887	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	DCAR_026357

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]