PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026367

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 381aa MW: 42110.2 Da PI: 6.0753

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026367	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.5e-08	295	335	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR++i +++ L++l+P + K++ a++L +A +Y+k L DCAR_026367 295 ARQRREKISEKIRVLQRLVPGgN------KMDTASMLDEAANYLKFL 335 69****************955......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.888	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-14	292	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-12	292	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.58E-10	292	340	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.9E-12	294	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-5	295	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MDNLDWECSA AATNVASSWS NQLNDMGERY AAMVNSCSNL NQKSNQMEQQ MASVNYLRSQ 60 EALRLAAEKV LANSCSWGWG EGSSTAELFS PQVMDPLSGL MVDLDVPVLG QPRYIEGKAA 120 DTAGSLGSLD CLISATNSNT DTSVEDDDIS SILFSDGKKL WNPRFMPLGD SENITAKIKA 180 EHCSRNSLMC ETNEAVSRCS AKRTNQSSGF ISDNQPKGKK PRLEKRPSSS NINFQHPDHS 240 SNCDEEPDTE AIAQMKEMMY RAAAFRPLNI GELDTAEKPK RKNVRISSDP QTVAARQRRE 300 KISEKIRVLQ RLVPGGNKMD TASMLDEAAN YLKFLRSQVK ALESLGPITT QFYPFPSHSP 360 FPFNHSFPMQ ITNNFSFPKP *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MDNLDWECSA AATNVASSWS NQLNDMGERY AAMVNSCSNL NQKSNQMEQQ MASVNYLRSQ  60
EALRLAAEKV LANSCSWGWG EGSSTAELFS PQVMDPLSGL MVDLDVPVLG QPRYIEGKAA  120
DTAGSLGSLD CLISATNSNT DTSVEDDDIS SILFSDGKKL WNPRFMPLGD SENITAKIKA  180
EHCSRNSLMC ETNEAVSRCS AKRTNQSSGF ISDNQPKGKK PRLEKRPSSS NINFQHPDHS  240
SNCDEEPDTE AIAQMKEMMY RAAAFRPLNI GELDTAEKPK RKNVRISSDP QTVAARQRRE  300
KISEKIRVLQ RLVPGGNKMD TASMLDEAAN YLKFLRSQVK ALESLGPITT QFYPFPSHSP  360
FPFNHSFPMQ ITNNFSFPKP *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017215737.1	0.0	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	2e-71	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A161ZP36	0.0	A0A161ZP36_DAUCS; Uncharacterized protein
STRING	VIT_09s0002g02700.t01	9e-88	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4350	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-72	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_026367

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]