PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026386

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 204aa MW: 23471.1 Da PI: 5.0197

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026386	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.5	3.4e-36	37	120	1	84
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 aCaaCk++rrkCa+dC+lapyfp+ ++++f n+hklFG+sn++k++++l++ ++++am++++y+A++ra+dPv G++++i++ q DCAR_026386 37 ACAACKYQRRKCAPDCILAPYFPHLRQRQFLNAHKLFGVSNITKIIRNLEKYDKDEAMRTIIYQADVRASDPVGGCYRIIRDDQ 120 7******************************************************************************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.111	36	137	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.8E-34	37	121	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MNNKNNNLET REITSNTPTP PPAATNNNIP RCNASQACAA CKYQRRKCAP DCILAPYFPH 60 LRQRQFLNAH KLFGVSNITK IIRNLEKYDK DEAMRTIIYQ ADVRASDPVG GCYRIIRDDQ 120 DRGQYILHGD DQVNFEEINS WGATENSATT LEVKRSYECE ENWEEDVNPK LLPYDRREEF 180 KIEAEEKSFD SVDDFRLKTT DAI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-23	33	120	7	94	LOB family transfactor Ramosa2.1
5ly0_B	1e-23	33	120	7	94	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017217509.1	5e-83	PREDICTED: LOB domain-containing protein 22-like
Refseq	XP_017227882.1	5e-83	PREDICTED: LOB domain-containing protein 22-like
TrEMBL	A0A164USU2	1e-150	A0A164USU2_DAUCS; Uncharacterized protein
STRING	XP_006466020.1	7e-50	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	6e-44	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	DCAR_026386