PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026393
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YA
Protein Properties Length: 359aa    MW: 40119.2 Da    PI: 7.8868
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026393genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.63.1e-31202258158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  dep+YVNaKQy +Il+RR+ Rakle++kkl +++rkpylheSRh hAl+R+RgsgGrF
  DCAR_026393 202 DEPIYVNAKQYGAILRRREYRAKLEAQKKL-IRNRKPYLHESRHLHALKRARGSGGRF 258
                  79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-35200261IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.943201261IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-26203258IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-22204226IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860206226IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.3E-22235258IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MFKVLDRGQT EFTNMHDLLK EEFVLSTADS VAPCIIGSSP WWTSAKSHID NSYAEQSCLS  60
KSLSLKMAAQ SSYCQSFKQL EFRFQDLDLS PTQSSSQSYP EVAGAAASNL CGQDMISTKS  120
SYKTIHEKLD FSKEILSMQA RDYVCPPLVD FRQQLERVPL SYPDPYCHGL PSTGTEPMEV  180
YHPHITAAAS ARVPLPNDFS QDEPIYVNAK QYGAILRRRE YRAKLEAQKK LIRNRKPYLH  240
ESRHLHALKR ARGSGGRFLN KKKLEDSNPI SESTQSQTCS TILKTELHCS PKTYDINPSP  300
TGWCYDMMTI SDNDSCSIFQ QQETSFSSYP AHVGMDLRGG KPTKSCSSLE FGGISSKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-18202263263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216426.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_017216427.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_017216428.10.0PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLA0A164USZ80.0A0A164USZ8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139661114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-45nuclear factor Y, subunit A3