PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026401
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WOX
Protein Properties Length: 240aa    MW: 27008.8 Da    PI: 5.3689
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026401genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.7e-20114174257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  r+R+t+t+ ql+ Le++Fe+   +ps+++++eL+++l     ++e++V++WFqNrRa+ k+
  DCAR_026401 114 RHRWTPTPVQLQKLERVFEEgIGTPSKQKIKELTAELsqhgPISETNVYNWFQNRRARSKR 174
                  89*****************99******************999*****************97 PP
2Wus_type_Homeobox93.12.5e-30113176265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtPtp Q++ Le+++++G+ tP+k++i+++taeL+++G i+++NV++WFQNr+aR+++kq
        DCAR_026401 113 TRHRWTPTPVQLQKLERVFEEGIGTPSKQKIKELTAELSQHGPISETNVYNWFQNRRARSKRKQ 176
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-16110179IPR009057Homeodomain-like
PROSITE profilePS5007114.511110175IPR001356Homeobox domain
SMARTSM003897.7E-15112179IPR001356Homeobox domain
SuperFamilySSF466891.58E-17113176IPR009057Homeodomain-like
CDDcd000863.49E-14114176No hitNo description
PfamPF000468.8E-18114174IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MIKDYLVTEE ELELITRSME VNTNQEAQHY QNHSENNNDI LYNTDGDVDG LCMKVMTDEQ  60
IEVLRKQISA YATLSQQLAE MHRFFSAQQD LTAGLGGLYC DPLMTYGGSK ITTRHRWTPT  120
PVQLQKLERV FEEGIGTPSK QKIKELTAEL SQHGPISETN VYNWFQNRRA RSKRKQFAEA  180
PNNPEPEFEA ESESSEKTIA KDAYSQDPGS HSLDTQPGKG KSSFTSGHNT KPYSSHGSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167175RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216447.10.0PREDICTED: WUSCHEL-related homeobox 8-like isoform X2
SwissprotQ5QMM33e-65WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A164UT441e-180A0A164UT44_DAUCS; Uncharacterized protein
STRINGEMJ107851e-69(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.16e-60WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]