PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026454
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CAMTA
Protein Properties Length: 1140aa    MW: 127023 Da    PI: 5.2691
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026454genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1165.68.1e-52281432116
         CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                  ++e ++rwlk+ e++ iL+n+e  +lt ++ ++p+ gsl+L+n++++ryfrkDG+sw++kkdg+tv E+he+LKvg+ e+l+cyYah+e np+fqrr+
  DCAR_026454  28 VQEaQHRWLKPPEVLFILKNYEDSQLTDKPLQKPPGGSLFLFNKRVLRYFRKDGHSWRRKKDGRTVGEAHERLKVGNAEALNCYYAHGELNPNFQRRS 125
                  66779********************************************************************************************* PP

         CG-1  99 ywlLeeelekivlvhyle 116
                  yw+Le ++e+ivlvhy++
  DCAR_026454 126 YWMLEPAYEHIVLVHYRD 143
                  ****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.85924150IPR005559CG-1 DNA-binding domain
SMARTSM010764.2E-7227145IPR005559CG-1 DNA-binding domain
PfamPF038592.0E-4630143IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.7E-5570651IPR013783Immunoglobulin-like fold
SuperFamilySSF812964.9E-12581650IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.202.0E-16756857IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.2764856IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.55E-15767858IPR020683Ankyrin repeat-containing domain
CDDcd002048.45E-15769856No hitNo description
PfamPF127962.4E-8771857IPR020683Ankyrin repeat-containing domain
SMARTSM002487.3E-5797826IPR002110Ankyrin repeat
PROSITE profilePS5008812.022797829IPR002110Ankyrin repeat
SMARTSM002481800836865IPR002110Ankyrin repeat
SMARTSM0001542914936IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.218915943IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.28E-79161029IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000152.2977999IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.9689781007IPR000048IQ motif, EF-hand binding site
PfamPF006120.0062980998IPR000048IQ motif, EF-hand binding site
SMARTSM000150.01610001022IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.8110021025IPR000048IQ motif, EF-hand binding site
PfamPF006121.2E-410031022IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1140 aa     Download sequence    Send to blast
MTSEDCMTGE YANRKETCIC GYNLSDLVQE AQHRWLKPPE VLFILKNYED SQLTDKPLQK  60
PPGGSLFLFN KRVLRYFRKD GHSWRRKKDG RTVGEAHERL KVGNAEALNC YYAHGELNPN  120
FQRRSYWMLE PAYEHIVLVH YRDITEVRHS GGSILQSSPG SYSTLNQSPS SYTTQVPGTT  180
SFAPEFQEQI QILSNPGSVN GSFQSDIKND MINISDVIER NEEIYSSPKV DINQALKRLT  240
QQLSLEDNCS GDNESFYDDN GVSHDTEYNV HGQSSIFPNQ LQDDSDHRIA QLFPDLCLDL  300
CLLSILGAIT TMEIAVEVDM EGREHGGDGS RQKQGGRGGG GPRRRLRWRR KETTDEAVVS  360
GGVASPELWK TTGVAIKRRQ WSKRSDGYST EGDGKGHYWQ PFEDDFSCNE ENAILNELLG  420
SYNNAAPAGS QETHLHIPNE NEAFLSPSSK KPVEEEESFE WADLAVNDTF SCPTSVLLPE  480
EAEYFKIATY SPSMNVYGIN SDHYSTVFEQ VPTERPLEEN PSLTVSQKQL FTIHEISPEW  540
GYAHEATKPP GCLMIECEGD MVFMKYCLNG IMPMTMSHEA IKVIVIGSFL CDPSDHVWTC  600
MFGEIEVPVQ IIHDGVIRCQ APPSLPGKVT LCLTSSNRES CSEVREFEYR ECPSSLPHSK  660
LLEAEASKDS EELLFLVRFV QMLLSDPLIS KREISGSGIE LLGNVEGNEE LWSGVIESLL  720
AGNCTSSGIA NWLLQELLKD KLQQWLSSRL QQVNDLQGGS FSKKEQGIIH MVAGMGYEWA  780
LKPILNSGVN VNYRDTNGFT ALHWAARFGR EEMVAALIAS GASAEAVTDP TKEAPTGKTP  840
ASIAAEYGYL GLAGYLSEVS LTSHLSSLTI AESELSKNSA SLEAERTINS ISDISTITSE  900
DQQSFRDSLA AVRNTAEAAA RIQAAFRAHS FRKRKLKEAA AAAFMANVDS QDQYSLLSND  960
AQSLSAASKL FFRNTRDYNN AALSIQKKYR GWKSRRDFLA FRQKVVKIQA HVRGHQVRKY  1020
YKVICWAVGI LEKVVLRWRR GGVGLRGFRN ESESIDGIED KDEDIVTVFR KQKILSIDEA  1080
VARVLSMVTS SEARQQYRRM LDKYRQAKAE LGGPANAAAA GEAASTSLDM SNMESDGTY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334340GGRGGGG
2343351RRLRWRRKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222955.10.0PREDICTED: calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A175YQX80.0A0A175YQX8_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000847380.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39322037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-146Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]