PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026483
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 391aa    MW: 44627.9 Da    PI: 6.2978
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026483genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.2e-11341389348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       W+  E++ l  +v+++G g+Wk+I ++       Rt+ ++k++w++++
      DCAR_026483 341 LWSNVEEDTLRTGVRKYGVGNWKLILNMYRdifDDRTEVDLKDKWRNLM 389
                      5**********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.113333390IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-12336389IPR009057Homeodomain-like
SuperFamilySSF466898.22E-15336389IPR009057Homeodomain-like
SMARTSM007179.0E-6338390IPR001005SANT/Myb domain
PfamPF002491.1E-9341388IPR001005SANT/Myb domain
CDDcd116607.75E-16342389No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDPDIARWVL DFLVRQPLDD STLTSLLTTL PLSNTDTHLT KLLLLKRIDS EISKNAVSES  60
VLGLLEQMEE LDYREHVEIS DSMKRAYCIV AVDCTVRFLE EGEKGFYFEA VKRIWRTRIG  120
CMMNFERVGL VSEELERWKD EIESAVWDDG ACKVLLEKWG GLDVVESVRV YIEEARGRIG  180
PSFLELVTES LSGEAVKEVF GIDKKDIHKE KVQRKSKPSA VKQHKKFSSK TTRGVKIVDN  240
DDLTLEQQES HNKDSSLSPT DVAKFQEGLR TSTSSLGKKA EDPFPDTVNI SKNVASNMDS  300
VDGCTETGNL GRLHLPSPKE RVVSPLKKYE SPKPLRRRRR LWSNVEEDTL RTGVRKYGVG  360
NWKLILNMYR DIFDDRTEVD LKDKWRNLMA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334340LRRRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220376.10.0PREDICTED: uncharacterized protein LOC108197305
TrEMBLA0A175YR220.0A0A175YR22_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.14e-27TRF-like 5