PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026538

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 466aa MW: 52570.3 Da PI: 6.6197

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026538	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.6e-13	277	320	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+ri++++++Lr l+Pk + K++ a+iL Av+YI +L DCAR_026538 277 VLIERNRRQRIKDGLFTLRALVPKiS------KMDRASILGDAVDYIADL 320 579*******************66......*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.9E-20	10	158	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	7.97E-13	270	325	No hit	No description
PROSITE profile	PS50888	15.218	271	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-15	272	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.8E-11	276	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.2E-14	277	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-14	277	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MGALERVVEL LRPLVKNKEW DYCVIWKLGD DPSSFIKWVD CCCCGGAANG HATAKEESGE 60 DVQQHIFPIC KDIYFPHLAK TKACEALAKY PASMPLYSGI HGDVAISNTQ MWVTSNATAS 120 NPKPGGTQVI IPVVGGLIEL FSTKNVLKDQ KLVEYITAHY NMSLEHEIMT GHCNTNHIIK 180 ERSHDPFVNE CLSVMPMLQN EAPNFNIDGS PTGPTPLDCP KSTRDSSESW ELNSKSKLSK 240 KEETKANLMC SKRAFDRQDR PKSRQRTQME SYQSKNVLIE RNRRQRIKDG LFTLRALVPK 300 ISKMDRASIL GDAVDYIADL KQMIACFQTE LKELEEAEYS KTSPIKQSHE GLPNSEECQE 360 TEVQMEIIRI GKREFLLKFI HSRKQAGVLR LLEAIHCLGF QVVDINVTTC EGKVMNIFKM 420 EVNQEDIEPN ELKESLLAIW RSKSDVMHEE KSLSTVIHQE VQVGI*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MGALERVVEL LRPLVKNKEW DYCVIWKLGD DPSSFIKWVD CCCCGGAANG HATAKEESGE  60
DVQQHIFPIC KDIYFPHLAK TKACEALAKY PASMPLYSGI HGDVAISNTQ MWVTSNATAS  120
NPKPGGTQVI IPVVGGLIEL FSTKNVLKDQ KLVEYITAHY NMSLEHEIMT GHCNTNHIIK  180
ERSHDPFVNE CLSVMPMLQN EAPNFNIDGS PTGPTPLDCP KSTRDSSESW ELNSKSKLSK  240
KEETKANLMC SKRAFDRQDR PKSRQRTQME SYQSKNVLIE RNRRQRIKDG LFTLRALVPK  300
ISKMDRASIL GDAVDYIADL KQMIACFQTE LKELEEAEYS KTSPIKQSHE GLPNSEECQE  360
TEVQMEIIRI GKREFLLKFI HSRKQAGVLR LLEAIHCLGF QVVDINVTTC EGKVMNIFKM  420
EVNQEDIEPN ELKESLLAIW RSKSDVMHEE KSLSTVIHQE VQVGI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222372.1	0.0	PREDICTED: transcription factor bHLH90-like
TrEMBL	A0A175YRW6	0.0	A0A175YRW6_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9929	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-29	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_026538