PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026689
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 354aa    MW: 39082.4 Da    PI: 5.6616
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026689genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.1e-164392255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 r +h+  E+rRR++iN++f+ Lrel+P++    ++K + a+ L +++eY+++Lq
  DCAR_026689 43 RSKHSVTEQRRRSKINERFQILRELIPNS----DQKRDTASFLLEVIEYVQYLQ 92
                 899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1839113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-2240113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.3744191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-134392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-144394No hitNo description
SMARTSM003537.6E-114797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MKSGKGHHEE EDEAYDDFGS KKDATPSTNT KDGKNSDKAS ATRSKHSVTE QRRRSKINER  60
FQILRELIPN SDQKRDTASF LLEVIEYVQY LQEKMQKYEG SYQGWSSEPT KLMPWRNSHW  120
RVQSLVGNPQ AVKNDPVPGS TFSGRFDENN VTILPPMHTN PQIPVDSDLS RDVSCKLIDQ  180
QPELANKGMV MPMPLHSNIG IPIQGDGVFS HPLQRPVSDA SISECGINGD APNNQEDLTI  240
EGGTISISSV YSQGLLNTLT QALESAGVDL TQATISVQVD LGKRANRGLA SGIPGAKDHD  300
DPSDDQPVGR FQDSIAGEVS DQDYAVSKSL CILKSTRLWT TRFKRQNRVN MIE*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220333.10.0PREDICTED: transcription factor BIM2 isoform X1
SwissprotQ9CAA41e-111BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A175YQI90.0A0A175YQI9_DAUCS; Uncharacterized protein
STRINGEMJ237641e-145(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-114BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]