PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026693

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 858aa MW: 94514.8 Da PI: 8.5082

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026693	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.7	1.5e-14	85	143	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++rr+++NRe+ArrsR RK++ ++eL v L +eN +L+++l++l++ +k+ e+ DCAR_026693 85 RKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENYSLIDKLNNLSESHDKVLEEN 143 79************************************************999988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-15	81	145	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.197	83	146	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.6E-12	85	158	No hit	No description
Pfam	PF00170	8.6E-13	85	143	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.06E-12	85	135	No hit	No description
CDD	cd14702	3.42E-20	86	137	No hit	No description
PROSITE pattern	PS00036	0	88	103	IPR004827	Basic-leucine zipper domain
CDD	cd03344	0	218	733	No hit	No description
TIGRFAMs	TIGR02348	7.5E-195	218	738	IPR001844	Chaperonin Cpn60
SuperFamily	SSF48592	1.15E-65	220	344	No hit	No description
Gene3D	G3DSA:1.10.560.10	1.6E-34	221	397	IPR027413	GroEL-like equatorial domain
Pfam	PF00118	7.5E-99	233	733	IPR002423	Chaperonin Cpn60/TCP-1 family
PRINTS	PR00298	2.8E-55	237	263	IPR001844	Chaperonin Cpn60
PRINTS	PR00298	2.8E-55	293	320	IPR001844	Chaperonin Cpn60
SuperFamily	SSF54849	2.75E-18	351	413	No hit	No description
SuperFamily	SSF52029	1.74E-63	394	585	IPR027409	GroEL-like apical domain
Gene3D	G3DSA:3.50.7.10	1.7E-71	398	577	IPR027409	GroEL-like apical domain
PRINTS	PR00298	2.8E-55	477	500	IPR001844	Chaperonin Cpn60
PRINTS	PR00298	2.8E-55	559	584	IPR001844	Chaperonin Cpn60
Gene3D	G3DSA:1.10.560.10	1.9E-33	578	729	IPR027413	GroEL-like equatorial domain
PRINTS	PR00298	2.8E-55	607	628	IPR001844	Chaperonin Cpn60
PROSITE pattern	PS00296	0	614	625	IPR018370	Chaperonin Cpn60, conserved site
SuperFamily	SSF48592	1.15E-65	615	733	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042026	Biological Process	protein refolding
GO:0009570	Cellular Component	chloroplast stroma
GO:0009941	Cellular Component	chloroplast envelope
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005524	Molecular Function	ATP binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence Send to blast
MLFPSEYAEI QSLNQDHPSP FVNNFAVSMQ EACMPSVLQY NTFLTNLPNF QANVPVHDFS 60 SCVSNNSTSD EGDDQLHTNM IIDERKQRRM ISNRESARRS RMRKQKHLDE LWSQVVRLRT 120 ENYSLIDKLN NLSESHDKVL EENAKLKEEN SGLRQMLTDA QLSSTYNSLK DLEEAHFNAE 180 SSSDQSIISY RMLSTSRKHQ QPAFLKTRAM GRELFFNHDG AATRKLLAGV ELVAELVGVT 240 LGPKGRNVVL QNKYGPPKIV NDGETVLKQI ELEDHLENVG VKLVRQAGAK TNDLAGDGST 300 TSVLLAHGLI AEGVKVIAAG MNPIQISRGI EKTALALVSE LKSMSREVED HEIADVASVS 360 AGNDPAVGKM ISEALEQVGK RGVITIERGN SVNNTLQIVE GMKFDRGYLS PYFVTDRRRM 420 IVQLQNCKLL LVDKIIKNPK EMLKILDNAV REEYPILIVA EGIEQEALAP VIRNKLKGVL 480 KAAAIKAPAF GERKSHCLDD IAILTGGTVI RDEMGLTLEK ARKELLGTTT KVVITKDSTL 540 IVTDGSTQAA VKKRVSQIEN LVKNTKEKFQ KKILNERIAR LSGGIAIIQV GAQTQIEQKD 600 KQLRIEDAVN ATKAAIDEGV VVGGGCCLLR LSLRVDEIMN TLDNEEQKIG AEIFKRALSY 660 PARQIAKNAG VNGNVVIEKV LSVDDAKYGY NAAKDQYEDL MAAGILDPTK VVRCCIENAA 720 SVAKTFLMSD AVVIYIDEPA PRRRRRPMPA LDEPAPSSRR RPMPSLGDLA PSRRRPMPSL 780 DDLAPGMRRP MPSLDDLAPG MRRPMPSLDD LAPGMRRPMP SLDDLAPGMR RPMPSLDDLA 840 PGMRRPMPTP GMGPLGL*

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence Send to blast

MLFPSEYAEI QSLNQDHPSP FVNNFAVSMQ EACMPSVLQY NTFLTNLPNF QANVPVHDFS  60
SCVSNNSTSD EGDDQLHTNM IIDERKQRRM ISNRESARRS RMRKQKHLDE LWSQVVRLRT  120
ENYSLIDKLN NLSESHDKVL EENAKLKEEN SGLRQMLTDA QLSSTYNSLK DLEEAHFNAE  180
SSSDQSIISY RMLSTSRKHQ QPAFLKTRAM GRELFFNHDG AATRKLLAGV ELVAELVGVT  240
LGPKGRNVVL QNKYGPPKIV NDGETVLKQI ELEDHLENVG VKLVRQAGAK TNDLAGDGST  300
TSVLLAHGLI AEGVKVIAAG MNPIQISRGI EKTALALVSE LKSMSREVED HEIADVASVS  360
AGNDPAVGKM ISEALEQVGK RGVITIERGN SVNNTLQIVE GMKFDRGYLS PYFVTDRRRM  420
IVQLQNCKLL LVDKIIKNPK EMLKILDNAV REEYPILIVA EGIEQEALAP VIRNKLKGVL  480
KAAAIKAPAF GERKSHCLDD IAILTGGTVI RDEMGLTLEK ARKELLGTTT KVVITKDSTL  540
IVTDGSTQAA VKKRVSQIEN LVKNTKEKFQ KKILNERIAR LSGGIAIIQV GAQTQIEQKD  600
KQLRIEDAVN ATKAAIDEGV VVGGGCCLLR LSLRVDEIMN TLDNEEQKIG AEIFKRALSY  660
PARQIAKNAG VNGNVVIEKV LSVDDAKYGY NAAKDQYEDL MAAGILDPTK VVRCCIENAA  720
SVAKTFLMSD AVVIYIDEPA PRRRRRPMPA LDEPAPSSRR RPMPSLGDLA PSRRRPMPSL  780
DDLAPGMRRP MPSLDDLAPG MRRPMPSLDD LAPGMRRPMP SLDDLAPGMR RPMPSLDDLA  840
PGMRRPMPTP GMGPLGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5cdi_A	0.0	210	738	1	531	Chaperonin 60B1
5cdi_B	0.0	210	738	1	531	Chaperonin 60B1
5cdi_C	0.0	210	738	1	531	Chaperonin 60B1
5cdi_D	0.0	210	738	1	531	Chaperonin 60B1
5cdi_E	0.0	210	738	1	531	Chaperonin 60B1
5cdi_F	0.0	210	738	1	531	Chaperonin 60B1
5cdi_G	0.0	210	738	1	531	Chaperonin 60B1
5cdi_H	0.0	210	738	1	531	Chaperonin 60B1
5cdi_I	0.0	210	738	1	531	Chaperonin 60B1
5cdi_J	0.0	210	738	1	531	Chaperonin 60B1
5cdi_K	0.0	210	738	1	531	Chaperonin 60B1
5cdi_L	0.0	210	738	1	531	Chaperonin 60B1
5cdi_M	0.0	210	738	1	531	Chaperonin 60B1
5cdi_N	0.0	210	738	1	531	Chaperonin 60B1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	104	RRSRMRKQ
2	740	746	PRRRRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Involved specifically in the folding of NDHH, a subunit of the chloroplast NADH dehydrogenase-like complex (NDH). {ECO:0000269\|PubMed:19224397, ECO:0000269\|PubMed:21483722, ECO:0000269\|Ref.5}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by light. {ECO:0000269\|PubMed:12231961}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222637.1	0.0	PREDICTED: chaperonin 60 subunit beta 4, chloroplastic-like
Swissprot	Q9C667	0.0	CPNB4_ARATH; Chaperonin 60 subunit beta 4, chloroplastic
TrEMBL	A0A175YQH6	0.0	A0A175YQH6_DAUCS; Uncharacterized protein
STRING	VIT_01s0010g00920.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	2e-46	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	DCAR_026693

Publications ? help Back to Top
Hill JE,Hemmingsen SM Arabidopsis thaliana type I and II chaperonins. Cell Stress Chaperones, 2001. 6(3): p. 190-200 [PMID:11599560] Pilgrim ML,McClung CR Differential Involvement of the Circadian Clock in the Expression of Genes Required for Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase Synthesis, Assembly, and Activation in Arabidopsis thaliana. Plant Physiol., 1993. 103(2): p. 553-564 [PMID:12231961] Gusmaroli G,Figueroa P,Serino G,Deng XW Role of the MPN subunits in COP9 signalosome assembly and activity, and their regulatory interaction with Arabidopsis Cullin3-based E3 ligases. Plant Cell, 2007. 19(2): p. 564-81 [PMID:17307927] Espagne C,Martinez A,Valot B,Meinnel T,Giglione C Alternative and effective proteomic analysis in Arabidopsis. Proteomics, 2007. 7(20): p. 3788-99 [PMID:17828791] Bonshtien AL, et al. Differential effects of co-chaperonin homologs on cpn60 oligomers. Cell Stress Chaperones, 2009. 14(5): p. 509-19 [PMID:19224397] Peng L, et al. A chaperonin subunit with unique structures is essential for folding of a specific substrate. PLoS Biol., 2011. 9(4): p. e1001040 [PMID:21483722] Ke X, et al. Functional divergence of chloroplast Cpn60α subunits during Arabidopsis embryo development. PLoS Genet., 2017. 13(9): p. e1007036 [PMID:28961247]